Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1734

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1733 and Dshi_1734 are separated by 251 nucleotidesDshi_1734 and Dshi_1735 are separated by 51 nucleotides Dshi_1733: Dshi_1733 - peptide chain release factor 1 (RefSeq), at 1,799,734 to 1,800,789 _1733 Dshi_1734: Dshi_1734 - hypothetical protein (RefSeq), at 1,801,041 to 1,801,505 _1734 Dshi_1735: Dshi_1735 - putative agmatinase (RefSeq), at 1,801,557 to 1,802,531 _1735 Position (kb) 1801 1802Strain fitness (log2 ratio) -1 0 1at 1800.821 kb on + strandat 1801.125 kb on + strand, within Dshi_1734at 1801.240 kb on - strand, within Dshi_1734at 1801.361 kb on - strand, within Dshi_1734at 1801.474 kb on + strandat 1801.518 kb on + strandat 1801.521 kb on - strandat 1801.521 kb on - strandat 1801.568 kb on - strandat 1801.578 kb on - strandat 1801.585 kb on - strandat 1801.755 kb on - strand, within Dshi_1735at 1801.784 kb on + strand, within Dshi_1735at 1801.818 kb on + strand, within Dshi_1735at 1801.837 kb on + strand, within Dshi_1735at 1801.991 kb on + strand, within Dshi_1735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
1,800,821 + -0.1
1,801,125 + Dshi_1734 0.18 +1.3
1,801,240 - Dshi_1734 0.43 +0.9
1,801,361 - Dshi_1734 0.69 +0.7
1,801,474 + -0.4
1,801,518 + +0.0
1,801,521 - -0.2
1,801,521 - -1.5
1,801,568 - -0.4
1,801,578 - +0.4
1,801,585 - -0.3
1,801,755 - Dshi_1735 0.20 -0.4
1,801,784 + Dshi_1735 0.23 -0.0
1,801,818 + Dshi_1735 0.27 +0.5
1,801,837 + Dshi_1735 0.29 -0.0
1,801,991 + Dshi_1735 0.45 -0.0

Or see this region's nucleotide sequence