Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0574

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0572 and Dshi_0573 overlap by 11 nucleotidesDshi_0573 and Dshi_0574 overlap by 4 nucleotidesDshi_0574 and Dshi_0575 are separated by 66 nucleotidesDshi_0575 and Dshi_0576 are separated by 411 nucleotides Dshi_0572: Dshi_0572 - transport system permease protein (RefSeq), at 561,851 to 562,933 _0572 Dshi_0573: Dshi_0573 - periplasmic binding protein (RefSeq), at 562,923 to 563,759 _0573 Dshi_0574: Dshi_0574 - Haemin-degrading family protein (RefSeq), at 563,756 to 564,787 _0574 Dshi_0575: Dshi_0575 - hypothetical protein (RefSeq), at 564,854 to 565,354 _0575 Dshi_0576: Dshi_0576 - transcriptional regulator, LysR family (RefSeq), at 565,766 to 566,635 _0576 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 562.781 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.784 kb on - strand, within Dshi_0572at 562.791 kb on - strand, within Dshi_0572at 562.791 kb on - strand, within Dshi_0572at 562.907 kb on + strandat 562.921 kb on + strandat 562.969 kb on - strandat 562.976 kb on + strandat 563.015 kb on + strand, within Dshi_0573at 563.022 kb on + strand, within Dshi_0573at 563.053 kb on + strand, within Dshi_0573at 563.111 kb on + strand, within Dshi_0573at 563.156 kb on - strand, within Dshi_0573at 563.181 kb on + strand, within Dshi_0573at 563.489 kb on + strand, within Dshi_0573at 563.604 kb on + strand, within Dshi_0573at 563.613 kb on - strand, within Dshi_0573at 563.663 kb on - strand, within Dshi_0573at 563.690 kb on + strandat 563.719 kb on - strandat 563.761 kb on - strandat 563.812 kb on + strandat 563.824 kb on - strandat 563.922 kb on + strand, within Dshi_0574at 563.927 kb on + strand, within Dshi_0574at 563.986 kb on + strand, within Dshi_0574at 564.085 kb on + strand, within Dshi_0574at 564.107 kb on - strand, within Dshi_0574at 564.186 kb on + strand, within Dshi_0574at 564.194 kb on - strand, within Dshi_0574at 564.220 kb on + strand, within Dshi_0574at 564.234 kb on - strand, within Dshi_0574at 564.298 kb on + strand, within Dshi_0574at 564.306 kb on - strand, within Dshi_0574at 564.306 kb on - strand, within Dshi_0574at 564.379 kb on + strand, within Dshi_0574at 564.387 kb on - strand, within Dshi_0574at 564.416 kb on - strand, within Dshi_0574at 564.424 kb on - strand, within Dshi_0574at 564.426 kb on + strand, within Dshi_0574at 564.426 kb on + strand, within Dshi_0574at 564.426 kb on - strand, within Dshi_0574at 564.441 kb on + strand, within Dshi_0574at 564.441 kb on + strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.467 kb on + strand, within Dshi_0574at 564.582 kb on + strand, within Dshi_0574at 564.672 kb on + strand, within Dshi_0574at 564.680 kb on - strand, within Dshi_0574at 564.694 kb on + strandat 564.707 kb on - strandat 564.707 kb on - strandat 564.721 kb on + strandat 564.857 kb on + strandat 564.912 kb on + strand, within Dshi_0575at 564.954 kb on + strand, within Dshi_0575at 564.962 kb on - strand, within Dshi_0575at 564.967 kb on - strand, within Dshi_0575at 564.986 kb on + strand, within Dshi_0575at 565.016 kb on + strand, within Dshi_0575at 565.027 kb on + strand, within Dshi_0575at 565.029 kb on + strand, within Dshi_0575at 565.079 kb on + strand, within Dshi_0575at 565.087 kb on - strand, within Dshi_0575at 565.100 kb on + strand, within Dshi_0575at 565.100 kb on + strand, within Dshi_0575at 565.108 kb on - strand, within Dshi_0575at 565.116 kb on + strand, within Dshi_0575at 565.125 kb on - strand, within Dshi_0575at 565.150 kb on + strand, within Dshi_0575at 565.150 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.158 kb on - strand, within Dshi_0575at 565.190 kb on + strand, within Dshi_0575at 565.190 kb on + strand, within Dshi_0575at 565.198 kb on - strand, within Dshi_0575at 565.198 kb on - strand, within Dshi_0575at 565.260 kb on - strand, within Dshi_0575at 565.261 kb on + strand, within Dshi_0575at 565.269 kb on - strand, within Dshi_0575at 565.385 kb on + strandat 565.393 kb on - strandat 565.412 kb on - strandat 565.422 kb on - strandat 565.437 kb on - strandat 565.491 kb on - strandat 565.499 kb on - strandat 565.506 kb on + strandat 565.521 kb on - strandat 565.523 kb on + strandat 565.531 kb on - strandat 565.531 kb on - strandat 565.571 kb on + strandat 565.571 kb on + strandat 565.584 kb on - strandat 565.587 kb on + strandat 565.587 kb on + strandat 565.587 kb on + strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.618 kb on - strandat 565.618 kb on - strandat 565.627 kb on + strandat 565.635 kb on - strandat 565.635 kb on - strandat 565.635 kb on - strandat 565.642 kb on - strandat 565.677 kb on - strandat 565.687 kb on - strandat 565.701 kb on + strandat 565.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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562,781 + Dshi_0572 0.86 +0.2
562,783 + Dshi_0572 0.86 +0.9
562,783 + Dshi_0572 0.86 -0.1
562,783 + Dshi_0572 0.86 +0.3
562,784 - Dshi_0572 0.86 -2.0
562,791 - Dshi_0572 0.87 -0.7
562,791 - Dshi_0572 0.87 -1.0
562,907 + -0.4
562,921 + +0.3
562,969 - -0.2
562,976 + -0.1
563,015 + Dshi_0573 0.11 -0.9
563,022 + Dshi_0573 0.12 -0.1
563,053 + Dshi_0573 0.16 +0.3
563,111 + Dshi_0573 0.22 -0.2
563,156 - Dshi_0573 0.28 +0.2
563,181 + Dshi_0573 0.31 -0.6
563,489 + Dshi_0573 0.68 -0.3
563,604 + Dshi_0573 0.81 -0.4
563,613 - Dshi_0573 0.82 -0.6
563,663 - Dshi_0573 0.88 -1.9
563,690 + -0.8
563,719 - -1.1
563,761 - -1.3
563,812 + -0.9
563,824 - +0.9
563,922 + Dshi_0574 0.16 -0.8
563,927 + Dshi_0574 0.17 +0.2
563,986 + Dshi_0574 0.22 -0.1
564,085 + Dshi_0574 0.32 -0.9
564,107 - Dshi_0574 0.34 -1.3
564,186 + Dshi_0574 0.42 -0.3
564,194 - Dshi_0574 0.42 -1.9
564,220 + Dshi_0574 0.45 -0.8
564,234 - Dshi_0574 0.46 -1.9
564,298 + Dshi_0574 0.53 +0.1
564,306 - Dshi_0574 0.53 -0.8
564,306 - Dshi_0574 0.53 -1.4
564,379 + Dshi_0574 0.60 -0.4
564,387 - Dshi_0574 0.61 -0.7
564,416 - Dshi_0574 0.64 -0.9
564,424 - Dshi_0574 0.65 -0.1
564,426 + Dshi_0574 0.65 -2.4
564,426 + Dshi_0574 0.65 -1.3
564,426 - Dshi_0574 0.65 -0.4
564,441 + Dshi_0574 0.66 +0.8
564,441 + Dshi_0574 0.66 -0.3
564,449 - Dshi_0574 0.67 -0.9
564,449 - Dshi_0574 0.67 +1.5
564,449 - Dshi_0574 0.67 -0.5
564,449 - Dshi_0574 0.67 -0.4
564,449 - Dshi_0574 0.67 -1.4
564,449 - Dshi_0574 0.67 -0.1
564,467 + Dshi_0574 0.69 -0.3
564,582 + Dshi_0574 0.80 -0.8
564,672 + Dshi_0574 0.89 -1.4
564,680 - Dshi_0574 0.90 -1.5
564,694 + -1.8
564,707 - -0.9
564,707 - -0.6
564,721 + +0.3
564,857 + -2.1
564,912 + Dshi_0575 0.12 -1.8
564,954 + Dshi_0575 0.20 -1.1
564,962 - Dshi_0575 0.22 -1.9
564,967 - Dshi_0575 0.23 -0.5
564,986 + Dshi_0575 0.26 -0.8
565,016 + Dshi_0575 0.32 -0.6
565,027 + Dshi_0575 0.35 -1.1
565,029 + Dshi_0575 0.35 -0.3
565,079 + Dshi_0575 0.45 -0.8
565,087 - Dshi_0575 0.47 -1.5
565,100 + Dshi_0575 0.49 -0.3
565,100 + Dshi_0575 0.49 -1.3
565,108 - Dshi_0575 0.51 -1.1
565,116 + Dshi_0575 0.52 -0.8
565,125 - Dshi_0575 0.54 -0.1
565,150 + Dshi_0575 0.59 +0.0
565,150 + Dshi_0575 0.59 +0.3
565,157 + Dshi_0575 0.60 -1.2
565,157 + Dshi_0575 0.60 +1.2
565,157 + Dshi_0575 0.60 -1.3
565,157 + Dshi_0575 0.60 +0.3
565,157 + Dshi_0575 0.60 -1.3
565,158 - Dshi_0575 0.61 -0.9
565,190 + Dshi_0575 0.67 -1.1
565,190 + Dshi_0575 0.67 -0.6
565,198 - Dshi_0575 0.69 -1.0
565,198 - Dshi_0575 0.69 -1.4
565,260 - Dshi_0575 0.81 -0.4
565,261 + Dshi_0575 0.81 -1.3
565,269 - Dshi_0575 0.83 -1.6
565,385 + -0.2
565,393 - -1.6
565,412 - +0.4
565,422 - -1.3
565,437 - -0.6
565,491 - -0.8
565,499 - +0.6
565,506 + -0.8
565,521 - -0.6
565,523 + -0.5
565,531 - -2.8
565,531 - -0.6
565,571 + -0.1
565,571 + -0.3
565,584 - +0.3
565,587 + -0.3
565,587 + -0.2
565,587 + -1.3
565,595 - +0.7
565,595 - +1.8
565,595 - -0.7
565,595 - -1.6
565,595 - -0.9
565,595 - -1.0
565,618 - -0.8
565,618 - +0.2
565,627 + +0.2
565,635 - -0.4
565,635 - -0.9
565,635 - -0.3
565,642 - -1.3
565,677 - -0.0
565,687 - -0.5
565,701 + -1.4
565,764 - +0.6

Or see this region's nucleotide sequence