Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0105

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0103 and Dshi_0104 overlap by 4 nucleotidesDshi_0104 and Dshi_0105 are separated by 11 nucleotidesDshi_0105 and Dshi_0106 overlap by 4 nucleotidesDshi_0106 and Dshi_0107 are separated by 119 nucleotides Dshi_0103: Dshi_0103 - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq), at 102,930 to 104,042 _0103 Dshi_0104: Dshi_0104 - GCN5-related N-acetyltransferase (RefSeq), at 104,039 to 104,527 _0104 Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249 _0105 Dshi_0106: Dshi_0106 - transcriptional regulator, TetR family (RefSeq), at 105,246 to 105,869 _0106 Dshi_0107: Dshi_0107 - Rubrerythrin (RefSeq), at 105,989 to 106,960 _0107 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2 3at 103.584 kb on + strand, within Dshi_0103at 103.592 kb on - strand, within Dshi_0103at 103.652 kb on + strand, within Dshi_0103at 103.665 kb on + strand, within Dshi_0103at 103.696 kb on - strand, within Dshi_0103at 103.711 kb on + strand, within Dshi_0103at 103.744 kb on - strand, within Dshi_0103at 103.772 kb on - strand, within Dshi_0103at 103.918 kb on + strand, within Dshi_0103at 103.979 kb on + strandat 103.987 kb on - strandat 104.044 kb on - strandat 104.060 kb on + strandat 104.060 kb on + strandat 104.068 kb on - strandat 104.092 kb on - strand, within Dshi_0104at 104.092 kb on - strand, within Dshi_0104at 104.132 kb on - strand, within Dshi_0104at 104.194 kb on + strand, within Dshi_0104at 104.194 kb on - strand, within Dshi_0104at 104.202 kb on - strand, within Dshi_0104at 104.229 kb on + strand, within Dshi_0104at 104.272 kb on - strand, within Dshi_0104at 104.308 kb on + strand, within Dshi_0104at 104.308 kb on + strand, within Dshi_0104at 104.308 kb on + strand, within Dshi_0104at 104.310 kb on + strand, within Dshi_0104at 104.388 kb on + strand, within Dshi_0104at 104.489 kb on - strandat 104.647 kb on + strand, within Dshi_0105at 104.666 kb on - strand, within Dshi_0105at 104.666 kb on - strand, within Dshi_0105at 104.694 kb on - strand, within Dshi_0105at 104.731 kb on + strand, within Dshi_0105at 104.830 kb on + strand, within Dshi_0105at 104.867 kb on + strand, within Dshi_0105at 104.960 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105at 105.114 kb on + strand, within Dshi_0105at 105.152 kb on + strand, within Dshi_0105at 105.160 kb on - strand, within Dshi_0105at 105.160 kb on - strand, within Dshi_0105at 105.197 kb on - strandat 105.256 kb on - strandat 105.256 kb on - strandat 105.348 kb on - strand, within Dshi_0106at 105.350 kb on - strand, within Dshi_0106at 105.357 kb on + strand, within Dshi_0106at 105.360 kb on - strand, within Dshi_0106at 105.380 kb on - strand, within Dshi_0106at 105.432 kb on + strand, within Dshi_0106at 105.432 kb on + strand, within Dshi_0106at 105.507 kb on - strand, within Dshi_0106at 105.546 kb on + strand, within Dshi_0106at 105.670 kb on + strand, within Dshi_0106at 105.787 kb on - strand, within Dshi_0106at 105.879 kb on + strandat 105.884 kb on + strandat 105.889 kb on + strandat 105.927 kb on - strandat 106.083 kb on - strandat 106.220 kb on + strand, within Dshi_0107

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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103,584 + Dshi_0103 0.59 +1.0
103,592 - Dshi_0103 0.59 +0.1
103,652 + Dshi_0103 0.65 +2.8
103,665 + Dshi_0103 0.66 +0.2
103,696 - Dshi_0103 0.69 -0.1
103,711 + Dshi_0103 0.70 +0.1
103,744 - Dshi_0103 0.73 +1.2
103,772 - Dshi_0103 0.76 +0.0
103,918 + Dshi_0103 0.89 -1.6
103,979 + -0.3
103,987 - -0.1
104,044 - +0.1
104,060 + -1.8
104,060 + -0.3
104,068 - -0.2
104,092 - Dshi_0104 0.11 +0.1
104,092 - Dshi_0104 0.11 -0.2
104,132 - Dshi_0104 0.19 -1.2
104,194 + Dshi_0104 0.32 -0.1
104,194 - Dshi_0104 0.32 -0.8
104,202 - Dshi_0104 0.33 -0.8
104,229 + Dshi_0104 0.39 +0.1
104,272 - Dshi_0104 0.48 -0.1
104,308 + Dshi_0104 0.55 -0.3
104,308 + Dshi_0104 0.55 -0.7
104,308 + Dshi_0104 0.55 +1.1
104,310 + Dshi_0104 0.55 -1.7
104,388 + Dshi_0104 0.71 -0.2
104,489 - +0.0
104,647 + Dshi_0105 0.15 -0.0
104,666 - Dshi_0105 0.18 -0.9
104,666 - Dshi_0105 0.18 -0.4
104,694 - Dshi_0105 0.22 -1.1
104,731 + Dshi_0105 0.27 -0.4
104,830 + Dshi_0105 0.41 -0.9
104,867 + Dshi_0105 0.46 -0.2
104,960 - Dshi_0105 0.59 +0.0
105,007 - Dshi_0105 0.66 +1.4
105,007 - Dshi_0105 0.66 +0.7
105,007 - Dshi_0105 0.66 -0.9
105,114 + Dshi_0105 0.81 +0.7
105,152 + Dshi_0105 0.86 +1.6
105,160 - Dshi_0105 0.87 +0.1
105,160 - Dshi_0105 0.87 -0.0
105,197 - +0.1
105,256 - +1.8
105,256 - -0.1
105,348 - Dshi_0106 0.16 -0.0
105,350 - Dshi_0106 0.17 +0.7
105,357 + Dshi_0106 0.18 -0.1
105,360 - Dshi_0106 0.18 +0.6
105,380 - Dshi_0106 0.21 +0.5
105,432 + Dshi_0106 0.30 +0.3
105,432 + Dshi_0106 0.30 +0.3
105,507 - Dshi_0106 0.42 +0.6
105,546 + Dshi_0106 0.48 +1.1
105,670 + Dshi_0106 0.68 -0.4
105,787 - Dshi_0106 0.87 -0.9
105,879 + +0.2
105,884 + +0.3
105,889 + +0.9
105,927 - -0.2
106,083 - +0.0
106,220 + Dshi_0107 0.24 +0.1

Or see this region's nucleotide sequence