Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_953 and HP15_954 are separated by 112 nucleotides HP15_954 and HP15_955 are separated by 177 nucleotides HP15_955 and HP15_956 are separated by 152 nucleotides HP15_956 and HP15_957 are separated by 130 nucleotides
HP15_953: HP15_953 - protein containing thiamine pyrophosphate enzyme, C-terminal TPP-binding / Thiamine pyrophosphate enzyme, N-terminal TPP binding region, at 969,711 to 971,369
_953
HP15_954: HP15_954 - peptidoglycan-associated cytoplasmic membrane protein, at 971,482 to 971,727
_954
HP15_955: HP15_955 - short chain fatty acid transporter, at 971,905 to 972,645
_955
HP15_956: HP15_956 - short chain fatty acid transporter, at 972,798 to 973,187
_956
HP15_957: HP15_957 - GDSL-like lipase/acylhydrolase domain protein, at 973,318 to 974,031
_957
Position (kb) 971
972
973 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.916 kb on - strand, within HP15_953 at 970.921 kb on - strand, within HP15_953 at 971.046 kb on + strand, within HP15_953 at 971.093 kb on - strand, within HP15_953 at 971.161 kb on - strand, within HP15_953 at 971.163 kb on - strand, within HP15_953 at 971.185 kb on + strand, within HP15_953 at 971.256 kb on + strand at 971.289 kb on + strand at 971.321 kb on - strand at 971.364 kb on - strand at 971.611 kb on - strand, within HP15_954 at 971.693 kb on - strand, within HP15_954 at 971.800 kb on + strand at 971.812 kb on + strand at 971.877 kb on - strand at 971.914 kb on + strand at 971.922 kb on - strand at 971.922 kb on - strand at 971.942 kb on + strand at 971.955 kb on + strand at 971.980 kb on - strand, within HP15_955 at 971.992 kb on - strand, within HP15_955 at 972.017 kb on + strand, within HP15_955 at 972.025 kb on - strand, within HP15_955 at 972.065 kb on + strand, within HP15_955 at 972.073 kb on - strand, within HP15_955 at 972.207 kb on - strand, within HP15_955 at 972.283 kb on - strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.341 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.501 kb on + strand, within HP15_955 at 972.507 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.571 kb on + strand, within HP15_955 at 972.639 kb on - strand at 972.736 kb on - strand at 972.741 kb on - strand at 972.820 kb on + strand at 972.830 kb on + strand at 972.949 kb on + strand, within HP15_956 at 972.972 kb on + strand, within HP15_956 at 972.995 kb on - strand, within HP15_956 at 973.001 kb on - strand, within HP15_956 at 973.060 kb on + strand, within HP15_956 at 973.135 kb on - strand, within HP15_956 at 973.149 kb on + strand at 973.203 kb on + strand at 973.289 kb on - strand at 973.435 kb on - strand, within HP15_957 at 973.486 kb on - strand, within HP15_957 at 973.543 kb on - strand, within HP15_957 at 973.603 kb on + strand, within HP15_957 at 973.613 kb on + strand, within HP15_957
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 970,916 - HP15_953 0.73 +0.2 970,916 - HP15_953 0.73 +0.5 970,916 - HP15_953 0.73 +0.6 970,916 - HP15_953 0.73 +0.2 970,916 - HP15_953 0.73 -0.3 970,916 - HP15_953 0.73 +0.7 970,921 - HP15_953 0.73 +0.3 971,046 + HP15_953 0.80 +1.2 971,093 - HP15_953 0.83 +0.2 971,161 - HP15_953 0.87 +1.1 971,163 - HP15_953 0.88 -1.2 971,185 + HP15_953 0.89 -0.2 971,256 + -0.4 971,289 + -0.3 971,321 - -0.4 971,364 - +1.0 971,611 - HP15_954 0.52 +0.9 971,693 - HP15_954 0.86 +0.2 971,800 + +0.4 971,812 + +0.4 971,877 - -0.1 971,914 + +1.0 971,922 - +0.1 971,922 - +0.9 971,942 + +2.2 971,955 + -0.0 971,980 - HP15_955 0.10 +0.1 971,992 - HP15_955 0.12 -0.4 972,017 + HP15_955 0.15 +0.1 972,025 - HP15_955 0.16 +3.3 972,065 + HP15_955 0.22 +1.3 972,073 - HP15_955 0.23 +1.3 972,207 - HP15_955 0.41 +2.7 972,283 - HP15_955 0.51 -0.1 972,323 + HP15_955 0.56 +0.4 972,323 + HP15_955 0.56 +1.3 972,341 + HP15_955 0.59 +1.8 972,417 + HP15_955 0.69 -1.9 972,417 + HP15_955 0.69 +0.1 972,501 + HP15_955 0.80 -0.6 972,507 - HP15_955 0.81 -0.0 972,539 - HP15_955 0.86 +1.1 972,539 - HP15_955 0.86 +0.8 972,571 + HP15_955 0.90 -2.7 972,639 - +0.1 972,736 - +0.4 972,741 - +0.8 972,820 + +0.8 972,830 + -0.4 972,949 + HP15_956 0.39 -2.4 972,972 + HP15_956 0.45 +1.6 972,995 - HP15_956 0.51 -0.1 973,001 - HP15_956 0.52 -0.1 973,060 + HP15_956 0.67 +0.5 973,135 - HP15_956 0.86 +0.4 973,149 + +2.8 973,203 + -0.8 973,289 - +0.4 973,435 - HP15_957 0.16 +1.0 973,486 - HP15_957 0.24 +0.1 973,543 - HP15_957 0.32 +1.4 973,603 + HP15_957 0.40 +0.3 973,613 + HP15_957 0.41 -1.8
Or see this region's nucleotide sequence