Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_925 and HP15_926 are separated by 78 nucleotides HP15_926 and HP15_927 overlap by 4 nucleotides HP15_927 and HP15_928 are separated by 78 nucleotides
HP15_925: HP15_925 - alpha/beta hydrolase fold protein, at 939,345 to 940,022
_925
HP15_926: HP15_926 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,101 to 940,904
_926
HP15_927: HP15_927 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,901 to 941,623
_927
HP15_928: HP15_928 - extracellular ligand-binding receptor, at 941,702 to 942,907
_928
Position (kb) 940
941
942 Strain fitness (log2 ratio) -1
0
1
2 at 940.102 kb on + strand at 940.134 kb on - strand at 940.286 kb on + strand, within HP15_926 at 940.299 kb on + strand, within HP15_926 at 940.307 kb on - strand, within HP15_926 at 940.423 kb on - strand, within HP15_926 at 940.474 kb on + strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.642 kb on + strand, within HP15_926 at 940.686 kb on + strand, within HP15_926 at 940.692 kb on + strand, within HP15_926 at 940.709 kb on - strand, within HP15_926 at 940.753 kb on + strand, within HP15_926 at 940.771 kb on - strand, within HP15_926 at 940.772 kb on - strand, within HP15_926 at 940.986 kb on + strand, within HP15_927 at 940.997 kb on + strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.020 kb on - strand, within HP15_927 at 941.053 kb on - strand, within HP15_927 at 941.097 kb on + strand, within HP15_927 at 941.256 kb on + strand, within HP15_927 at 941.288 kb on - strand, within HP15_927 at 941.313 kb on + strand, within HP15_927 at 941.413 kb on + strand, within HP15_927 at 941.441 kb on - strand, within HP15_927 at 941.479 kb on + strand, within HP15_927 at 941.505 kb on + strand, within HP15_927 at 941.537 kb on + strand, within HP15_927 at 941.545 kb on - strand, within HP15_927 at 941.583 kb on + strand at 941.583 kb on + strand at 941.659 kb on + strand at 941.809 kb on + strand at 941.924 kb on - strand, within HP15_928 at 941.970 kb on - strand, within HP15_928 at 942.083 kb on + strand, within HP15_928 at 942.194 kb on + strand, within HP15_928 at 942.264 kb on + strand, within HP15_928 at 942.268 kb on - strand, within HP15_928 at 942.311 kb on + strand, within HP15_928 at 942.311 kb on + strand, within HP15_928 at 942.354 kb on + strand, within HP15_928 at 942.389 kb on + strand, within HP15_928 at 942.395 kb on + strand, within HP15_928 at 942.426 kb on + strand, within HP15_928 at 942.474 kb on - strand, within HP15_928 at 942.511 kb on - strand, within HP15_928 at 942.511 kb on - strand, within HP15_928 at 942.572 kb on - strand, within HP15_928 at 942.617 kb on + strand, within HP15_928
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 940,102 + +0.1 940,134 - +0.4 940,286 + HP15_926 0.23 +1.2 940,299 + HP15_926 0.25 +0.3 940,307 - HP15_926 0.26 +0.4 940,423 - HP15_926 0.40 +0.2 940,474 + HP15_926 0.46 -0.4 940,482 - HP15_926 0.47 +0.0 940,482 - HP15_926 0.47 +0.1 940,642 + HP15_926 0.67 -0.4 940,686 + HP15_926 0.73 +0.5 940,692 + HP15_926 0.74 +0.1 940,709 - HP15_926 0.76 +0.2 940,753 + HP15_926 0.81 +0.6 940,771 - HP15_926 0.83 -0.2 940,772 - HP15_926 0.83 +0.4 940,986 + HP15_927 0.12 +0.3 940,997 + HP15_927 0.13 -0.8 941,005 - HP15_927 0.14 +0.4 941,005 - HP15_927 0.14 +0.4 941,020 - HP15_927 0.16 +0.1 941,053 - HP15_927 0.21 +1.0 941,097 + HP15_927 0.27 +1.2 941,256 + HP15_927 0.49 +0.9 941,288 - HP15_927 0.54 +1.0 941,313 + HP15_927 0.57 +2.3 941,413 + HP15_927 0.71 -0.0 941,441 - HP15_927 0.75 -0.6 941,479 + HP15_927 0.80 +0.5 941,505 + HP15_927 0.84 +0.2 941,537 + HP15_927 0.88 -0.7 941,545 - HP15_927 0.89 -0.1 941,583 + -0.1 941,583 + -0.9 941,659 + +0.5 941,809 + +0.2 941,924 - HP15_928 0.18 +0.5 941,970 - HP15_928 0.22 -0.5 942,083 + HP15_928 0.32 -0.6 942,194 + HP15_928 0.41 -1.3 942,264 + HP15_928 0.47 -0.4 942,268 - HP15_928 0.47 +0.5 942,311 + HP15_928 0.50 +0.1 942,311 + HP15_928 0.50 +0.6 942,354 + HP15_928 0.54 -0.4 942,389 + HP15_928 0.57 -0.2 942,395 + HP15_928 0.57 +1.0 942,426 + HP15_928 0.60 -1.0 942,474 - HP15_928 0.64 -0.3 942,511 - HP15_928 0.67 +0.6 942,511 - HP15_928 0.67 -0.3 942,572 - HP15_928 0.72 -0.5 942,617 + HP15_928 0.76 +0.1
Or see this region's nucleotide sequence