Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_921 and HP15_922 overlap by 1 nucleotides HP15_922 and HP15_923 are separated by 173 nucleotides
HP15_921: HP15_921 - alcohol dehydrogenase, zinc-binding domain protein, at 934,962 to 935,918
_921
HP15_922: HP15_922 - proline racemase, at 935,918 to 936,979
_922
HP15_923: HP15_923 - acetyl-coA synthetase/AMP-(fatty) acid ligase, at 937,153 to 938,802
_923
Position (kb) 935
936
937 Strain fitness (log2 ratio) -1
0
1
2
3 at 934.936 kb on + strand at 935.009 kb on + strand at 935.024 kb on - strand at 935.054 kb on + strand at 935.311 kb on - strand, within HP15_921 at 935.386 kb on + strand, within HP15_921 at 935.443 kb on + strand, within HP15_921 at 935.454 kb on + strand, within HP15_921 at 935.454 kb on + strand, within HP15_921 at 935.458 kb on - strand, within HP15_921 at 935.477 kb on - strand, within HP15_921 at 935.479 kb on + strand, within HP15_921 at 935.482 kb on - strand, within HP15_921 at 935.487 kb on - strand, within HP15_921 at 935.518 kb on + strand, within HP15_921 at 935.537 kb on - strand, within HP15_921 at 935.602 kb on + strand, within HP15_921 at 935.759 kb on + strand, within HP15_921 at 935.973 kb on + strand at 936.009 kb on + strand at 936.123 kb on - strand, within HP15_922 at 936.300 kb on - strand, within HP15_922 at 936.303 kb on + strand, within HP15_922 at 936.357 kb on + strand, within HP15_922 at 936.438 kb on + strand, within HP15_922 at 936.532 kb on + strand, within HP15_922 at 936.540 kb on - strand, within HP15_922 at 936.826 kb on + strand, within HP15_922 at 936.860 kb on + strand, within HP15_922 at 936.867 kb on - strand, within HP15_922 at 936.872 kb on - strand, within HP15_922 at 936.921 kb on + strand at 936.924 kb on - strand at 937.011 kb on - strand at 937.116 kb on + strand at 937.117 kb on - strand at 937.117 kb on - strand at 937.117 kb on - strand at 937.117 kb on - strand at 937.301 kb on - strand at 937.447 kb on - strand, within HP15_923 at 937.545 kb on + strand, within HP15_923 at 937.583 kb on + strand, within HP15_923 at 937.613 kb on - strand, within HP15_923 at 937.655 kb on + strand, within HP15_923 at 937.772 kb on - strand, within HP15_923 at 937.772 kb on - strand, within HP15_923 at 937.803 kb on - strand, within HP15_923
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 934,936 + +0.5 935,009 + -0.9 935,024 - -0.4 935,054 + -0.7 935,311 - HP15_921 0.36 -0.2 935,386 + HP15_921 0.44 -0.2 935,443 + HP15_921 0.50 +0.2 935,454 + HP15_921 0.51 +1.6 935,454 + HP15_921 0.51 -0.2 935,458 - HP15_921 0.52 +1.2 935,477 - HP15_921 0.54 -0.5 935,479 + HP15_921 0.54 -0.4 935,482 - HP15_921 0.54 -1.0 935,487 - HP15_921 0.55 -0.5 935,518 + HP15_921 0.58 -0.2 935,537 - HP15_921 0.60 -0.5 935,602 + HP15_921 0.67 -0.3 935,759 + HP15_921 0.83 +0.3 935,973 + +0.8 936,009 + +0.5 936,123 - HP15_922 0.19 +0.1 936,300 - HP15_922 0.36 +1.1 936,303 + HP15_922 0.36 +0.2 936,357 + HP15_922 0.41 +0.0 936,438 + HP15_922 0.49 +0.1 936,532 + HP15_922 0.58 +1.6 936,540 - HP15_922 0.59 -0.5 936,826 + HP15_922 0.85 +0.4 936,860 + HP15_922 0.89 +2.8 936,867 - HP15_922 0.89 +0.9 936,872 - HP15_922 0.90 +1.3 936,921 + -0.3 936,924 - -1.4 937,011 - +0.6 937,116 + +0.6 937,117 - +0.4 937,117 - +0.0 937,117 - +0.3 937,117 - +0.3 937,301 - +0.1 937,447 - HP15_923 0.18 -0.1 937,545 + HP15_923 0.24 -0.7 937,583 + HP15_923 0.26 +1.9 937,613 - HP15_923 0.28 -0.2 937,655 + HP15_923 0.30 -0.4 937,772 - HP15_923 0.38 +0.9 937,772 - HP15_923 0.38 -0.6 937,803 - HP15_923 0.39 +0.3
Or see this region's nucleotide sequence