Strain Fitness in Marinobacter adhaerens HP15 around HP15_64

Experiment: m.b. Carbenicillin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_62 and HP15_63 are separated by 63 nucleotidesHP15_63 and HP15_64 are separated by 17 nucleotidesHP15_64 and HP15_65 overlap by 4 nucleotides HP15_62: HP15_62 - hypothetical protein, at 66,801 to 66,905 _62 HP15_63: HP15_63 - 2-oxoisovalerate dehydrogenase, E1 component, beta subunit, at 66,969 to 67,775 _63 HP15_64: HP15_64 - catalytic domain of components of various dehydrogenase complexes, at 67,793 to 69,091 _64 HP15_65: HP15_65 - dihydrolipoamide dehydrogenase, at 69,088 to 70,473 _65 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 66.799 kb on - strandat 66.839 kb on - strand, within HP15_62at 66.844 kb on + strand, within HP15_62at 66.919 kb on + strandat 66.927 kb on - strandat 66.958 kb on - strandat 66.984 kb on - strandat 66.984 kb on - strandat 67.022 kb on - strandat 67.022 kb on - strandat 67.137 kb on + strand, within HP15_63at 67.186 kb on - strand, within HP15_63at 67.441 kb on + strand, within HP15_63at 67.441 kb on - strand, within HP15_63at 67.559 kb on - strand, within HP15_63at 67.570 kb on + strand, within HP15_63at 67.580 kb on + strand, within HP15_63at 67.604 kb on + strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.612 kb on - strand, within HP15_63at 67.617 kb on - strand, within HP15_63at 67.689 kb on + strand, within HP15_63at 67.692 kb on - strand, within HP15_63at 67.882 kb on + strandat 67.898 kb on + strandat 67.939 kb on + strand, within HP15_64at 67.954 kb on - strand, within HP15_64at 67.964 kb on - strand, within HP15_64at 67.981 kb on - strand, within HP15_64at 68.052 kb on + strand, within HP15_64at 68.085 kb on - strand, within HP15_64at 68.136 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.167 kb on + strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.175 kb on - strand, within HP15_64at 68.264 kb on + strand, within HP15_64at 68.370 kb on - strand, within HP15_64at 68.577 kb on - strand, within HP15_64at 68.686 kb on + strand, within HP15_64at 68.696 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.702 kb on + strand, within HP15_64at 68.717 kb on + strand, within HP15_64at 68.736 kb on + strand, within HP15_64at 68.752 kb on - strand, within HP15_64at 68.757 kb on + strand, within HP15_64at 68.762 kb on + strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.762 kb on - strand, within HP15_64at 68.775 kb on - strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.776 kb on + strand, within HP15_64at 68.780 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.784 kb on - strand, within HP15_64at 68.794 kb on + strand, within HP15_64at 68.881 kb on + strand, within HP15_64at 68.929 kb on + strand, within HP15_64at 68.936 kb on + strand, within HP15_64at 68.969 kb on + strandat 69.021 kb on - strandat 69.046 kb on + strandat 69.099 kb on + strandat 69.129 kb on - strandat 69.165 kb on + strandat 69.176 kb on - strandat 69.187 kb on - strandat 69.207 kb on - strandat 69.282 kb on + strand, within HP15_65at 69.282 kb on + strand, within HP15_65at 69.290 kb on - strand, within HP15_65at 69.353 kb on - strand, within HP15_65at 69.401 kb on - strand, within HP15_65at 69.440 kb on - strand, within HP15_65at 69.478 kb on + strand, within HP15_65at 69.541 kb on - strand, within HP15_65at 69.595 kb on + strand, within HP15_65at 69.595 kb on - strand, within HP15_65at 69.613 kb on - strand, within HP15_65at 69.625 kb on - strand, within HP15_65at 69.651 kb on - strand, within HP15_65at 69.652 kb on + strand, within HP15_65at 69.720 kb on + strand, within HP15_65at 69.728 kb on - strand, within HP15_65at 69.775 kb on - strand, within HP15_65at 69.775 kb on - strand, within HP15_65at 69.815 kb on - strand, within HP15_65at 69.842 kb on + strand, within HP15_65at 69.843 kb on + strand, within HP15_65at 69.852 kb on - strand, within HP15_65at 69.913 kb on + strand, within HP15_65at 69.921 kb on - strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.945 kb on + strand, within HP15_65at 69.962 kb on + strand, within HP15_65at 70.044 kb on - strand, within HP15_65at 70.069 kb on + strand, within HP15_65at 70.076 kb on - strand, within HP15_65

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml
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66,799 - +0.3
66,839 - HP15_62 0.36 -0.1
66,844 + HP15_62 0.41 +0.3
66,919 + +0.1
66,927 - -0.6
66,958 - -1.3
66,984 - +0.0
66,984 - +0.0
67,022 - -0.4
67,022 - -1.4
67,137 + HP15_63 0.21 -0.1
67,186 - HP15_63 0.27 -0.2
67,441 + HP15_63 0.58 -0.1
67,441 - HP15_63 0.58 -0.7
67,559 - HP15_63 0.73 -0.4
67,570 + HP15_63 0.74 +0.1
67,580 + HP15_63 0.76 -1.9
67,604 + HP15_63 0.79 +0.5
67,612 - HP15_63 0.80 -0.6
67,612 - HP15_63 0.80 +0.5
67,617 - HP15_63 0.80 +0.1
67,689 + HP15_63 0.89 -0.1
67,692 - HP15_63 0.90 +1.5
67,882 + +0.6
67,898 + -0.0
67,939 + HP15_64 0.11 -1.5
67,954 - HP15_64 0.12 -0.9
67,964 - HP15_64 0.13 -0.6
67,981 - HP15_64 0.14 +0.2
68,052 + HP15_64 0.20 -0.3
68,085 - HP15_64 0.22 +1.2
68,136 + HP15_64 0.26 -0.8
68,167 + HP15_64 0.29 -0.4
68,167 + HP15_64 0.29 +2.5
68,167 + HP15_64 0.29 +0.2
68,167 + HP15_64 0.29 +0.3
68,167 + HP15_64 0.29 -0.2
68,175 - HP15_64 0.29 -0.9
68,175 - HP15_64 0.29 +0.3
68,175 - HP15_64 0.29 -0.3
68,175 - HP15_64 0.29 -1.4
68,264 + HP15_64 0.36 +0.4
68,370 - HP15_64 0.44 -0.8
68,577 - HP15_64 0.60 +0.5
68,686 + HP15_64 0.69 +0.3
68,696 + HP15_64 0.70 -0.1
68,702 + HP15_64 0.70 +1.5
68,702 + HP15_64 0.70 +0.2
68,702 + HP15_64 0.70 -0.1
68,717 + HP15_64 0.71 -0.3
68,736 + HP15_64 0.73 +0.6
68,752 - HP15_64 0.74 -0.7
68,757 + HP15_64 0.74 -0.4
68,762 + HP15_64 0.75 +0.9
68,762 - HP15_64 0.75 +0.1
68,762 - HP15_64 0.75 -0.5
68,762 - HP15_64 0.75 +0.3
68,762 - HP15_64 0.75 +0.1
68,762 - HP15_64 0.75 -1.2
68,762 - HP15_64 0.75 +0.0
68,775 - HP15_64 0.76 -0.8
68,776 + HP15_64 0.76 +0.3
68,776 + HP15_64 0.76 -0.1
68,776 + HP15_64 0.76 -0.8
68,776 + HP15_64 0.76 -0.0
68,776 + HP15_64 0.76 -0.9
68,776 + HP15_64 0.76 -0.1
68,780 - HP15_64 0.76 -0.3
68,784 - HP15_64 0.76 -0.8
68,784 - HP15_64 0.76 -0.5
68,784 - HP15_64 0.76 -0.3
68,784 - HP15_64 0.76 -2.4
68,794 + HP15_64 0.77 -1.9
68,881 + HP15_64 0.84 -0.1
68,929 + HP15_64 0.87 -1.1
68,936 + HP15_64 0.88 +0.2
68,969 + -0.0
69,021 - -0.3
69,046 + -0.0
69,099 + -0.1
69,129 - +0.5
69,165 + -1.3
69,176 - +1.0
69,187 - +0.1
69,207 - -0.0
69,282 + HP15_65 0.14 -0.3
69,282 + HP15_65 0.14 -0.5
69,290 - HP15_65 0.15 -1.2
69,353 - HP15_65 0.19 -1.3
69,401 - HP15_65 0.23 -0.5
69,440 - HP15_65 0.25 -0.8
69,478 + HP15_65 0.28 -0.1
69,541 - HP15_65 0.33 +1.0
69,595 + HP15_65 0.37 +0.9
69,595 - HP15_65 0.37 +1.7
69,613 - HP15_65 0.38 -0.2
69,625 - HP15_65 0.39 -0.2
69,651 - HP15_65 0.41 -0.1
69,652 + HP15_65 0.41 -0.2
69,720 + HP15_65 0.46 +0.6
69,728 - HP15_65 0.46 -0.1
69,775 - HP15_65 0.50 -0.7
69,775 - HP15_65 0.50 +2.2
69,815 - HP15_65 0.52 -0.1
69,842 + HP15_65 0.54 +0.0
69,843 + HP15_65 0.54 -0.1
69,852 - HP15_65 0.55 +0.2
69,913 + HP15_65 0.60 -0.2
69,921 - HP15_65 0.60 -0.1
69,945 + HP15_65 0.62 +0.0
69,945 + HP15_65 0.62 -0.3
69,945 + HP15_65 0.62 +0.2
69,962 + HP15_65 0.63 +0.6
70,044 - HP15_65 0.69 -0.9
70,069 + HP15_65 0.71 +0.2
70,076 - HP15_65 0.71 +0.6

Or see this region's nucleotide sequence