Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g70 and HP15_p187g71 are separated by 15 nucleotides HP15_p187g71 and HP15_p187g72 are separated by 412 nucleotides HP15_p187g72 and HP15_p187g73 overlap by 116 nucleotides HP15_p187g73 and HP15_p187g74 are separated by 172 nucleotides
HP15_p187g70: HP15_p187g70 - membrane protein containing DUF304, prokaryotic transmembrane adjacent region, at 64,339 to 65,091
_p187g70
HP15_p187g71: HP15_p187g71 - hypothetical protein, at 65,107 to 65,490
_p187g71
HP15_p187g72: HP15_p187g72 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase, at 65,903 to 67,009
_p187g72
HP15_p187g73: HP15_p187g73 - conserved hypothetical protein, at 66,894 to 67,733
_p187g73
HP15_p187g74: HP15_p187g74 - hypothetical protein, at 67,906 to 68,238
_p187g74
Position (kb) 65
66
67
68 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 64.925 kb on - strand, within HP15_p187g70 at 64.941 kb on + strand, within HP15_p187g70 at 64.943 kb on - strand, within HP15_p187g70 at 65.014 kb on + strand, within HP15_p187g70 at 65.014 kb on + strand, within HP15_p187g70 at 65.022 kb on - strand at 65.022 kb on - strand at 65.022 kb on - strand at 65.022 kb on - strand at 65.022 kb on - strand at 65.034 kb on + strand at 65.085 kb on + strand at 65.085 kb on + strand at 65.087 kb on - strand at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on + strand, within HP15_p187g71 at 65.175 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.183 kb on - strand, within HP15_p187g71 at 65.185 kb on + strand, within HP15_p187g71 at 65.185 kb on + strand, within HP15_p187g71 at 65.185 kb on + strand, within HP15_p187g71 at 65.185 kb on - strand, within HP15_p187g71 at 65.203 kb on - strand, within HP15_p187g71 at 65.219 kb on + strand, within HP15_p187g71 at 65.239 kb on - strand, within HP15_p187g71 at 65.244 kb on + strand, within HP15_p187g71 at 65.244 kb on + strand, within HP15_p187g71 at 65.244 kb on + strand, within HP15_p187g71 at 65.327 kb on - strand, within HP15_p187g71 at 65.337 kb on - strand, within HP15_p187g71 at 65.354 kb on + strand, within HP15_p187g71 at 65.354 kb on + strand, within HP15_p187g71 at 65.362 kb on - strand, within HP15_p187g71 at 65.362 kb on - strand, within HP15_p187g71 at 65.362 kb on - strand, within HP15_p187g71 at 65.362 kb on - strand, within HP15_p187g71 at 65.371 kb on + strand, within HP15_p187g71 at 65.399 kb on + strand, within HP15_p187g71 at 65.399 kb on + strand, within HP15_p187g71 at 65.401 kb on + strand, within HP15_p187g71 at 65.401 kb on + strand, within HP15_p187g71 at 65.401 kb on + strand, within HP15_p187g71 at 65.401 kb on + strand, within HP15_p187g71 at 65.401 kb on + strand, within HP15_p187g71 at 65.407 kb on - strand, within HP15_p187g71 at 65.407 kb on - strand, within HP15_p187g71 at 65.409 kb on - strand, within HP15_p187g71 at 65.409 kb on - strand, within HP15_p187g71 at 65.409 kb on - strand, within HP15_p187g71 at 65.409 kb on - strand, within HP15_p187g71 at 65.414 kb on + strand, within HP15_p187g71 at 65.414 kb on + strand, within HP15_p187g71 at 65.414 kb on + strand, within HP15_p187g71 at 65.414 kb on + strand, within HP15_p187g71 at 65.414 kb on + strand, within HP15_p187g71 at 65.414 kb on + strand, within HP15_p187g71 at 65.416 kb on + strand, within HP15_p187g71 at 65.422 kb on - strand, within HP15_p187g71 at 65.422 kb on - strand, within HP15_p187g71 at 65.422 kb on - strand, within HP15_p187g71 at 65.424 kb on - strand, within HP15_p187g71 at 65.435 kb on + strand, within HP15_p187g71 at 65.443 kb on - strand, within HP15_p187g71 at 65.443 kb on - strand, within HP15_p187g71 at 65.443 kb on - strand, within HP15_p187g71 at 65.444 kb on - strand, within HP15_p187g71 at 65.475 kb on + strand at 65.483 kb on + strand at 65.491 kb on - strand at 65.491 kb on - strand at 65.498 kb on + strand at 65.498 kb on + strand at 65.506 kb on - strand at 65.506 kb on - strand at 65.506 kb on - strand at 65.508 kb on + strand at 65.516 kb on - strand at 65.529 kb on + strand at 65.533 kb on + strand at 65.533 kb on + strand at 65.537 kb on - strand at 65.537 kb on - strand at 65.541 kb on + strand at 65.543 kb on + strand at 65.687 kb on + strand at 65.844 kb on + strand at 65.844 kb on + strand at 65.849 kb on + strand at 65.852 kb on - strand at 65.852 kb on - strand at 65.852 kb on - strand at 65.852 kb on - strand at 65.883 kb on + strand at 65.889 kb on - strand at 65.955 kb on - strand at 65.972 kb on + strand at 65.975 kb on - strand at 65.980 kb on - strand at 66.025 kb on + strand, within HP15_p187g72 at 66.033 kb on - strand, within HP15_p187g72 at 66.059 kb on - strand, within HP15_p187g72 at 66.061 kb on + strand, within HP15_p187g72 at 66.061 kb on + strand, within HP15_p187g72 at 66.066 kb on + strand, within HP15_p187g72 at 66.069 kb on - strand, within HP15_p187g72 at 66.069 kb on - strand, within HP15_p187g72 at 66.074 kb on - strand, within HP15_p187g72 at 66.074 kb on - strand, within HP15_p187g72 at 66.219 kb on + strand, within HP15_p187g72 at 66.225 kb on + strand, within HP15_p187g72 at 66.225 kb on + strand, within HP15_p187g72 at 66.231 kb on + strand, within HP15_p187g72 at 66.233 kb on - strand, within HP15_p187g72 at 66.240 kb on + strand, within HP15_p187g72 at 66.279 kb on + strand, within HP15_p187g72 at 66.279 kb on + strand, within HP15_p187g72 at 66.284 kb on + strand, within HP15_p187g72 at 66.368 kb on + strand, within HP15_p187g72 at 66.368 kb on + strand, within HP15_p187g72 at 66.376 kb on - strand, within HP15_p187g72 at 66.376 kb on - strand, within HP15_p187g72 at 66.403 kb on - strand, within HP15_p187g72 at 66.486 kb on - strand, within HP15_p187g72 at 66.499 kb on - strand, within HP15_p187g72 at 66.554 kb on + strand, within HP15_p187g72 at 66.582 kb on + strand, within HP15_p187g72 at 66.590 kb on - strand, within HP15_p187g72 at 66.607 kb on + strand, within HP15_p187g72 at 66.661 kb on - strand, within HP15_p187g72 at 66.671 kb on - strand, within HP15_p187g72 at 66.671 kb on - strand, within HP15_p187g72 at 66.671 kb on - strand, within HP15_p187g72 at 66.673 kb on - strand, within HP15_p187g72 at 66.694 kb on + strand, within HP15_p187g72 at 66.697 kb on - strand, within HP15_p187g72 at 66.713 kb on + strand, within HP15_p187g72 at 66.739 kb on - strand, within HP15_p187g72 at 66.739 kb on - strand, within HP15_p187g72 at 66.746 kb on + strand, within HP15_p187g72 at 66.747 kb on + strand, within HP15_p187g72 at 66.755 kb on - strand, within HP15_p187g72 at 66.755 kb on - strand, within HP15_p187g72 at 66.755 kb on - strand, within HP15_p187g72 at 66.757 kb on + strand, within HP15_p187g72 at 66.765 kb on - strand, within HP15_p187g72 at 66.765 kb on - strand, within HP15_p187g72 at 66.765 kb on - strand, within HP15_p187g72 at 66.769 kb on + strand, within HP15_p187g72 at 66.780 kb on + strand, within HP15_p187g72 at 66.822 kb on - strand, within HP15_p187g72 at 66.830 kb on - strand, within HP15_p187g72 at 66.852 kb on - strand, within HP15_p187g72 at 66.871 kb on + strand, within HP15_p187g72 at 66.871 kb on + strand, within HP15_p187g72 at 66.878 kb on + strand, within HP15_p187g72 at 66.878 kb on + strand, within HP15_p187g72 at 66.880 kb on - strand, within HP15_p187g72 at 66.885 kb on + strand, within HP15_p187g72 at 66.885 kb on + strand, within HP15_p187g72 at 66.886 kb on - strand, within HP15_p187g72 at 66.886 kb on - strand, within HP15_p187g72 at 66.888 kb on - strand, within HP15_p187g72 at 66.890 kb on + strand, within HP15_p187g72 at 66.997 kb on - strand at 67.007 kb on - strand at 67.032 kb on - strand, within HP15_p187g73 at 67.087 kb on - strand, within HP15_p187g73 at 67.087 kb on - strand, within HP15_p187g73 at 67.097 kb on + strand, within HP15_p187g73 at 67.111 kb on - strand, within HP15_p187g73 at 67.128 kb on + strand, within HP15_p187g73 at 67.166 kb on - strand, within HP15_p187g73 at 67.184 kb on + strand, within HP15_p187g73 at 67.191 kb on + strand, within HP15_p187g73 at 67.192 kb on - strand, within HP15_p187g73 at 67.242 kb on - strand, within HP15_p187g73 at 67.385 kb on - strand, within HP15_p187g73 at 67.402 kb on + strand, within HP15_p187g73 at 67.410 kb on + strand, within HP15_p187g73 at 67.412 kb on + strand, within HP15_p187g73 at 67.420 kb on - strand, within HP15_p187g73 at 67.420 kb on - strand, within HP15_p187g73 at 67.422 kb on - strand, within HP15_p187g73 at 67.443 kb on - strand, within HP15_p187g73 at 67.483 kb on - strand, within HP15_p187g73 at 67.511 kb on + strand, within HP15_p187g73 at 67.523 kb on + strand, within HP15_p187g73 at 67.577 kb on - strand, within HP15_p187g73 at 67.587 kb on + strand, within HP15_p187g73 at 67.599 kb on + strand, within HP15_p187g73 at 67.600 kb on - strand, within HP15_p187g73 at 67.618 kb on - strand, within HP15_p187g73 at 67.618 kb on - strand, within HP15_p187g73 at 67.627 kb on + strand, within HP15_p187g73 at 67.627 kb on + strand, within HP15_p187g73 at 67.635 kb on - strand, within HP15_p187g73 at 67.650 kb on + strand at 67.650 kb on - strand at 67.652 kb on + strand at 67.658 kb on - strand at 67.658 kb on - strand at 67.665 kb on - strand at 67.680 kb on + strand at 67.688 kb on - strand at 67.693 kb on - strand at 67.706 kb on + strand at 67.714 kb on - strand at 67.730 kb on + strand at 67.772 kb on + strand at 67.818 kb on + strand at 67.826 kb on + strand at 67.828 kb on + strand at 67.828 kb on + strand at 67.834 kb on - strand at 67.836 kb on - strand at 67.846 kb on - strand at 67.998 kb on + strand, within HP15_p187g74 at 67.998 kb on + strand, within HP15_p187g74 at 67.998 kb on + strand, within HP15_p187g74 at 67.998 kb on + strand, within HP15_p187g74 at 68.006 kb on - strand, within HP15_p187g74 at 68.006 kb on - strand, within HP15_p187g74
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 64,925 - HP15_p187g70 0.78 +0.9 64,941 + HP15_p187g70 0.80 -1.4 64,943 - HP15_p187g70 0.80 -0.4 65,014 + HP15_p187g70 0.90 +0.6 65,014 + HP15_p187g70 0.90 +0.7 65,022 - +0.9 65,022 - +0.5 65,022 - +0.5 65,022 - -0.4 65,022 - -0.6 65,034 + +0.1 65,085 + +1.3 65,085 + -0.1 65,087 - -0.7 65,175 + HP15_p187g71 0.18 +0.5 65,175 + HP15_p187g71 0.18 -0.3 65,175 + HP15_p187g71 0.18 +0.3 65,175 + HP15_p187g71 0.18 -0.3 65,175 + HP15_p187g71 0.18 -1.7 65,175 + HP15_p187g71 0.18 +1.6 65,175 + HP15_p187g71 0.18 +0.0 65,175 + HP15_p187g71 0.18 -0.3 65,175 + HP15_p187g71 0.18 -0.5 65,175 + HP15_p187g71 0.18 -0.0 65,175 + HP15_p187g71 0.18 -0.7 65,175 + HP15_p187g71 0.18 -0.4 65,175 + HP15_p187g71 0.18 -0.2 65,175 - HP15_p187g71 0.18 +0.0 65,183 - HP15_p187g71 0.20 -0.4 65,183 - HP15_p187g71 0.20 +1.4 65,183 - HP15_p187g71 0.20 +0.4 65,183 - HP15_p187g71 0.20 -0.1 65,183 - HP15_p187g71 0.20 +0.3 65,183 - HP15_p187g71 0.20 +0.6 65,183 - HP15_p187g71 0.20 +1.0 65,183 - HP15_p187g71 0.20 -0.5 65,185 + HP15_p187g71 0.20 -0.3 65,185 + HP15_p187g71 0.20 -0.1 65,185 + HP15_p187g71 0.20 +0.4 65,185 - HP15_p187g71 0.20 +0.3 65,203 - HP15_p187g71 0.25 -0.1 65,219 + HP15_p187g71 0.29 +0.6 65,239 - HP15_p187g71 0.34 -0.6 65,244 + HP15_p187g71 0.36 -0.7 65,244 + HP15_p187g71 0.36 +0.9 65,244 + HP15_p187g71 0.36 -0.2 65,327 - HP15_p187g71 0.57 -1.2 65,337 - HP15_p187g71 0.60 +0.4 65,354 + HP15_p187g71 0.64 -0.0 65,354 + HP15_p187g71 0.64 -1.7 65,362 - HP15_p187g71 0.66 +0.4 65,362 - HP15_p187g71 0.66 -0.7 65,362 - HP15_p187g71 0.66 -0.6 65,362 - HP15_p187g71 0.66 -1.3 65,371 + HP15_p187g71 0.69 +2.4 65,399 + HP15_p187g71 0.76 -0.5 65,399 + HP15_p187g71 0.76 -0.1 65,401 + HP15_p187g71 0.77 +0.0 65,401 + HP15_p187g71 0.77 +0.8 65,401 + HP15_p187g71 0.77 +1.4 65,401 + HP15_p187g71 0.77 -0.7 65,401 + HP15_p187g71 0.77 -0.2 65,407 - HP15_p187g71 0.78 +0.4 65,407 - HP15_p187g71 0.78 +0.5 65,409 - HP15_p187g71 0.79 +0.7 65,409 - HP15_p187g71 0.79 +0.5 65,409 - HP15_p187g71 0.79 +0.7 65,409 - HP15_p187g71 0.79 +0.2 65,414 + HP15_p187g71 0.80 +1.2 65,414 + HP15_p187g71 0.80 +0.4 65,414 + HP15_p187g71 0.80 -1.0 65,414 + HP15_p187g71 0.80 +0.8 65,414 + HP15_p187g71 0.80 -0.4 65,414 + HP15_p187g71 0.80 -0.3 65,416 + HP15_p187g71 0.80 -0.3 65,422 - HP15_p187g71 0.82 -0.8 65,422 - HP15_p187g71 0.82 +0.2 65,422 - HP15_p187g71 0.82 -0.3 65,424 - HP15_p187g71 0.83 +0.1 65,435 + HP15_p187g71 0.85 -0.2 65,443 - HP15_p187g71 0.88 -0.4 65,443 - HP15_p187g71 0.88 -0.0 65,443 - HP15_p187g71 0.88 -1.0 65,444 - HP15_p187g71 0.88 +0.5 65,475 + +2.6 65,483 + -1.1 65,491 - +0.4 65,491 - +1.6 65,498 + +0.6 65,498 + +0.0 65,506 - +0.2 65,506 - +0.3 65,506 - +2.7 65,508 + -2.2 65,516 - +0.5 65,529 + -2.7 65,533 + -1.3 65,533 + +0.0 65,537 - +0.0 65,537 - +0.1 65,541 + +0.2 65,543 + -0.5 65,687 + +1.0 65,844 + -0.1 65,844 + -0.1 65,849 + +0.1 65,852 - -0.3 65,852 - +1.6 65,852 - +2.4 65,852 - -0.4 65,883 + -1.0 65,889 - -1.8 65,955 - +0.1 65,972 + +0.3 65,975 - +0.4 65,980 - -0.2 66,025 + HP15_p187g72 0.11 -0.8 66,033 - HP15_p187g72 0.12 -0.3 66,059 - HP15_p187g72 0.14 +0.2 66,061 + HP15_p187g72 0.14 -0.4 66,061 + HP15_p187g72 0.14 +1.6 66,066 + HP15_p187g72 0.15 -0.1 66,069 - HP15_p187g72 0.15 -0.2 66,069 - HP15_p187g72 0.15 +0.3 66,074 - HP15_p187g72 0.15 -0.4 66,074 - HP15_p187g72 0.15 +1.2 66,219 + HP15_p187g72 0.29 -0.7 66,225 + HP15_p187g72 0.29 -0.6 66,225 + HP15_p187g72 0.29 -1.0 66,231 + HP15_p187g72 0.30 -1.0 66,233 - HP15_p187g72 0.30 -0.7 66,240 + HP15_p187g72 0.30 -0.0 66,279 + HP15_p187g72 0.34 +0.0 66,279 + HP15_p187g72 0.34 -0.1 66,284 + HP15_p187g72 0.34 -0.1 66,368 + HP15_p187g72 0.42 -0.6 66,368 + HP15_p187g72 0.42 +0.1 66,376 - HP15_p187g72 0.43 +0.0 66,376 - HP15_p187g72 0.43 -1.6 66,403 - HP15_p187g72 0.45 -1.0 66,486 - HP15_p187g72 0.53 -1.6 66,499 - HP15_p187g72 0.54 -0.5 66,554 + HP15_p187g72 0.59 -0.4 66,582 + HP15_p187g72 0.61 +0.3 66,590 - HP15_p187g72 0.62 -0.2 66,607 + HP15_p187g72 0.64 -0.2 66,661 - HP15_p187g72 0.68 -0.7 66,671 - HP15_p187g72 0.69 +0.2 66,671 - HP15_p187g72 0.69 -2.7 66,671 - HP15_p187g72 0.69 -0.5 66,673 - HP15_p187g72 0.70 +0.3 66,694 + HP15_p187g72 0.71 +0.7 66,697 - HP15_p187g72 0.72 +0.3 66,713 + HP15_p187g72 0.73 -1.6 66,739 - HP15_p187g72 0.76 +0.2 66,739 - HP15_p187g72 0.76 -0.2 66,746 + HP15_p187g72 0.76 -0.2 66,747 + HP15_p187g72 0.76 +0.0 66,755 - HP15_p187g72 0.77 +0.6 66,755 - HP15_p187g72 0.77 -0.1 66,755 - HP15_p187g72 0.77 -1.2 66,757 + HP15_p187g72 0.77 -0.4 66,765 - HP15_p187g72 0.78 -0.1 66,765 - HP15_p187g72 0.78 +0.2 66,765 - HP15_p187g72 0.78 -0.9 66,769 + HP15_p187g72 0.78 -0.7 66,780 + HP15_p187g72 0.79 -0.4 66,822 - HP15_p187g72 0.83 -0.4 66,830 - HP15_p187g72 0.84 -0.2 66,852 - HP15_p187g72 0.86 -0.3 66,871 + HP15_p187g72 0.87 +2.2 66,871 + HP15_p187g72 0.87 +1.9 66,878 + HP15_p187g72 0.88 -0.1 66,878 + HP15_p187g72 0.88 +0.7 66,880 - HP15_p187g72 0.88 -0.6 66,885 + HP15_p187g72 0.89 -1.4 66,885 + HP15_p187g72 0.89 +0.7 66,886 - HP15_p187g72 0.89 -0.0 66,886 - HP15_p187g72 0.89 +0.3 66,888 - HP15_p187g72 0.89 -0.1 66,890 + HP15_p187g72 0.89 +3.3 66,997 - -0.3 67,007 - +1.4 67,032 - HP15_p187g73 0.16 +0.1 67,087 - HP15_p187g73 0.23 +0.2 67,087 - HP15_p187g73 0.23 +0.3 67,097 + HP15_p187g73 0.24 -1.3 67,111 - HP15_p187g73 0.26 -0.6 67,128 + HP15_p187g73 0.28 +0.0 67,166 - HP15_p187g73 0.32 -0.7 67,184 + HP15_p187g73 0.35 +0.4 67,191 + HP15_p187g73 0.35 +2.2 67,192 - HP15_p187g73 0.35 -0.1 67,242 - HP15_p187g73 0.41 +0.5 67,385 - HP15_p187g73 0.58 -0.4 67,402 + HP15_p187g73 0.60 +2.0 67,410 + HP15_p187g73 0.61 -0.6 67,412 + HP15_p187g73 0.62 +0.2 67,420 - HP15_p187g73 0.63 -0.3 67,420 - HP15_p187g73 0.63 +0.6 67,422 - HP15_p187g73 0.63 +0.3 67,443 - HP15_p187g73 0.65 +0.3 67,483 - HP15_p187g73 0.70 -1.2 67,511 + HP15_p187g73 0.73 +0.5 67,523 + HP15_p187g73 0.75 +0.9 67,577 - HP15_p187g73 0.81 -0.6 67,587 + HP15_p187g73 0.82 -0.1 67,599 + HP15_p187g73 0.84 -0.1 67,600 - HP15_p187g73 0.84 +0.3 67,618 - HP15_p187g73 0.86 -1.2 67,618 - HP15_p187g73 0.86 +0.4 67,627 + HP15_p187g73 0.87 +1.5 67,627 + HP15_p187g73 0.87 -0.4 67,635 - HP15_p187g73 0.88 -0.5 67,650 + +0.4 67,650 - -1.3 67,652 + +1.8 67,658 - +0.2 67,658 - -0.2 67,665 - +0.2 67,680 + +2.4 67,688 - +0.3 67,693 - +0.1 67,706 + +0.4 67,714 - -0.4 67,730 + -0.1 67,772 + +0.0 67,818 + +0.0 67,826 + -0.0 67,828 + +0.1 67,828 + -0.5 67,834 - -0.8 67,836 - -2.4 67,846 - -1.4 67,998 + HP15_p187g74 0.28 -1.5 67,998 + HP15_p187g74 0.28 +0.1 67,998 + HP15_p187g74 0.28 +0.1 67,998 + HP15_p187g74 0.28 +0.4 68,006 - HP15_p187g74 0.30 -0.2 68,006 - HP15_p187g74 0.30 +0.0
Or see this region's nucleotide sequence