Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2560 and HP15_2561 overlap by 27 nucleotides HP15_2561 and HP15_2562 are separated by 10 nucleotides
HP15_2560: HP15_2560 - TRAP dicarboxylate transporter- DctP subunit, at 2,706,000 to 2,707,103
_2560
HP15_2561: HP15_2561 - MscS Mechanosensitive ion channel, at 2,707,077 to 2,707,880
_2561
HP15_2562: HP15_2562 - conserved hypothetical protein, at 2,707,891 to 2,709,126
_2562
Position (kb)
2707
2708 Strain fitness (log2 ratio)
-1
0
1
2 at 2706.085 kb on - strand at 2706.127 kb on + strand, within HP15_2560 at 2706.306 kb on + strand, within HP15_2560 at 2706.379 kb on - strand, within HP15_2560 at 2706.419 kb on - strand, within HP15_2560 at 2706.421 kb on + strand, within HP15_2560 at 2706.429 kb on - strand, within HP15_2560 at 2706.502 kb on - strand, within HP15_2560 at 2706.564 kb on + strand, within HP15_2560 at 2706.592 kb on + strand, within HP15_2560 at 2706.607 kb on + strand, within HP15_2560 at 2706.646 kb on - strand, within HP15_2560 at 2706.667 kb on - strand, within HP15_2560 at 2706.720 kb on + strand, within HP15_2560 at 2706.728 kb on - strand, within HP15_2560 at 2706.728 kb on - strand, within HP15_2560 at 2706.738 kb on - strand, within HP15_2560 at 2706.851 kb on + strand, within HP15_2560 at 2706.873 kb on - strand, within HP15_2560 at 2706.986 kb on + strand, within HP15_2560 at 2707.083 kb on - strand at 2707.083 kb on - strand at 2707.121 kb on + strand at 2707.198 kb on + strand, within HP15_2561 at 2707.279 kb on + strand, within HP15_2561 at 2707.356 kb on + strand, within HP15_2561 at 2707.356 kb on + strand, within HP15_2561 at 2707.483 kb on + strand, within HP15_2561 at 2707.483 kb on + strand, within HP15_2561 at 2707.549 kb on - strand, within HP15_2561 at 2707.550 kb on - strand, within HP15_2561 at 2707.598 kb on - strand, within HP15_2561 at 2707.653 kb on + strand, within HP15_2561 at 2707.785 kb on + strand, within HP15_2561 at 2707.793 kb on - strand, within HP15_2561 at 2707.793 kb on - strand, within HP15_2561 at 2708.008 kb on + strand at 2708.008 kb on + strand at 2708.012 kb on + strand at 2708.016 kb on - strand, within HP15_2562 at 2708.022 kb on + strand, within HP15_2562 at 2708.067 kb on + strand, within HP15_2562 at 2708.115 kb on + strand, within HP15_2562 at 2708.123 kb on - strand, within HP15_2562 at 2708.185 kb on - strand, within HP15_2562 at 2708.213 kb on - strand, within HP15_2562 at 2708.770 kb on - strand, within HP15_2562
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 2,706,085 - -0.2 2,706,127 + HP15_2560 0.12 -0.7 2,706,306 + HP15_2560 0.28 +0.1 2,706,379 - HP15_2560 0.34 -0.2 2,706,419 - HP15_2560 0.38 +0.0 2,706,421 + HP15_2560 0.38 -0.8 2,706,429 - HP15_2560 0.39 -0.5 2,706,502 - HP15_2560 0.45 +0.3 2,706,564 + HP15_2560 0.51 +0.1 2,706,592 + HP15_2560 0.54 -0.6 2,706,607 + HP15_2560 0.55 -0.1 2,706,646 - HP15_2560 0.59 +0.4 2,706,667 - HP15_2560 0.60 +0.4 2,706,720 + HP15_2560 0.65 +0.2 2,706,728 - HP15_2560 0.66 -0.6 2,706,728 - HP15_2560 0.66 -1.0 2,706,738 - HP15_2560 0.67 -0.4 2,706,851 + HP15_2560 0.77 -0.7 2,706,873 - HP15_2560 0.79 -0.3 2,706,986 + HP15_2560 0.89 +0.0 2,707,083 - +0.7 2,707,083 - -0.1 2,707,121 + -0.2 2,707,198 + HP15_2561 0.15 +0.2 2,707,279 + HP15_2561 0.25 -0.5 2,707,356 + HP15_2561 0.35 -0.0 2,707,356 + HP15_2561 0.35 -0.3 2,707,483 + HP15_2561 0.50 -0.1 2,707,483 + HP15_2561 0.50 -0.9 2,707,549 - HP15_2561 0.59 +1.1 2,707,550 - HP15_2561 0.59 -0.3 2,707,598 - HP15_2561 0.65 +0.1 2,707,653 + HP15_2561 0.72 -0.0 2,707,785 + HP15_2561 0.88 -0.7 2,707,793 - HP15_2561 0.89 -1.0 2,707,793 - HP15_2561 0.89 -0.5 2,708,008 + -0.2 2,708,008 + +0.2 2,708,012 + -0.3 2,708,016 - HP15_2562 0.10 -0.8 2,708,022 + HP15_2562 0.11 -0.3 2,708,067 + HP15_2562 0.14 +0.9 2,708,115 + HP15_2562 0.18 +0.7 2,708,123 - HP15_2562 0.19 +0.2 2,708,185 - HP15_2562 0.24 +2.3 2,708,213 - HP15_2562 0.26 -0.3 2,708,770 - HP15_2562 0.71 +1.0
Or see this region's nucleotide sequence