Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2548 and HP15_2549 are separated by 30 nucleotides HP15_2549 and HP15_2550 are separated by 23 nucleotides HP15_2550 and HP15_2551 are separated by 1 nucleotides
HP15_2548: HP15_2548 - xanthine/uracil permease family protein, at 2,694,502 to 2,695,800
_2548
HP15_2549: HP15_2549 - adenine phosphoribosyltransferase, at 2,695,831 to 2,696,373
_2549
HP15_2550: HP15_2550 - fumarylacetoacetate hydrolase family protein, at 2,696,397 to 2,697,059
_2550
HP15_2551: HP15_2551 - ABC-1 domain protein, at 2,697,061 to 2,698,416
_2551
Position (kb)
2696
2697
2698 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2695.514 kb on + strand, within HP15_2548 at 2695.585 kb on - strand, within HP15_2548 at 2695.699 kb on + strand at 2695.724 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.881 kb on - strand at 2695.881 kb on - strand at 2695.881 kb on - strand at 2695.883 kb on + strand at 2695.891 kb on - strand, within HP15_2549 at 2695.929 kb on + strand, within HP15_2549 at 2696.038 kb on + strand, within HP15_2549 at 2696.046 kb on - strand, within HP15_2549 at 2696.046 kb on - strand, within HP15_2549 at 2696.046 kb on - strand, within HP15_2549 at 2696.053 kb on - strand, within HP15_2549 at 2696.076 kb on - strand, within HP15_2549 at 2696.152 kb on - strand, within HP15_2549 at 2696.348 kb on - strand at 2696.348 kb on - strand at 2696.499 kb on - strand, within HP15_2550 at 2696.499 kb on - strand, within HP15_2550 at 2696.640 kb on + strand, within HP15_2550 at 2696.684 kb on + strand, within HP15_2550 at 2696.769 kb on - strand, within HP15_2550 at 2697.128 kb on + strand at 2697.129 kb on + strand at 2697.278 kb on + strand, within HP15_2551 at 2697.537 kb on - strand, within HP15_2551 at 2697.755 kb on - strand, within HP15_2551 at 2697.828 kb on + strand, within HP15_2551 at 2697.852 kb on + strand, within HP15_2551 at 2697.852 kb on + strand, within HP15_2551 at 2697.927 kb on + strand, within HP15_2551
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 2,695,514 + HP15_2548 0.78 -0.6 2,695,585 - HP15_2548 0.83 +0.5 2,695,699 + -0.9 2,695,724 + +0.9 2,695,873 + -0.2 2,695,873 + +0.4 2,695,873 + -0.2 2,695,873 + -0.6 2,695,873 + +0.1 2,695,873 + -0.3 2,695,881 - +0.2 2,695,881 - +1.0 2,695,881 - +1.7 2,695,883 + +0.2 2,695,891 - HP15_2549 0.11 +0.5 2,695,929 + HP15_2549 0.18 -1.9 2,696,038 + HP15_2549 0.38 +1.0 2,696,046 - HP15_2549 0.40 -0.5 2,696,046 - HP15_2549 0.40 -0.7 2,696,046 - HP15_2549 0.40 +0.1 2,696,053 - HP15_2549 0.41 +2.5 2,696,076 - HP15_2549 0.45 -0.4 2,696,152 - HP15_2549 0.59 +0.9 2,696,348 - -0.1 2,696,348 - -0.3 2,696,499 - HP15_2550 0.15 +1.9 2,696,499 - HP15_2550 0.15 +0.6 2,696,640 + HP15_2550 0.37 +0.4 2,696,684 + HP15_2550 0.43 +0.4 2,696,769 - HP15_2550 0.56 +1.0 2,697,128 + +0.1 2,697,129 + -0.7 2,697,278 + HP15_2551 0.16 -0.0 2,697,537 - HP15_2551 0.35 -0.2 2,697,755 - HP15_2551 0.51 +0.3 2,697,828 + HP15_2551 0.57 -0.1 2,697,852 + HP15_2551 0.58 +0.0 2,697,852 + HP15_2551 0.58 +0.5 2,697,927 + HP15_2551 0.64 -0.2
Or see this region's nucleotide sequence