Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2337 and HP15_2338 overlap by 8 nucleotides HP15_2338 and HP15_2339 are separated by 31 nucleotides HP15_2339 and HP15_2340 are separated by 2 nucleotides
HP15_2337: HP15_2337 - conserved hypothetical protein, at 2,455,835 to 2,456,812
_2337
HP15_2338: HP15_2338 - peptidase C26, at 2,456,805 to 2,457,539
_2338
HP15_2339: HP15_2339 - secreted protein containing DUF541, at 2,457,571 to 2,458,275
_2339
HP15_2340: HP15_2340 - protein containing DUF490, at 2,458,278 to 2,461,961
_2340
Position (kb)
2456
2457
2458 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2455.814 kb on + strand at 2455.814 kb on + strand at 2455.822 kb on - strand at 2455.904 kb on - strand at 2455.906 kb on + strand at 2455.994 kb on + strand, within HP15_2337 at 2456.013 kb on - strand, within HP15_2337 at 2456.103 kb on - strand, within HP15_2337 at 2456.164 kb on - strand, within HP15_2337 at 2456.180 kb on - strand, within HP15_2337 at 2456.206 kb on + strand, within HP15_2337 at 2456.332 kb on + strand, within HP15_2337 at 2456.510 kb on - strand, within HP15_2337 at 2456.591 kb on - strand, within HP15_2337 at 2456.756 kb on + strand at 2456.806 kb on + strand at 2456.806 kb on + strand at 2456.902 kb on + strand, within HP15_2338 at 2456.933 kb on - strand, within HP15_2338 at 2456.958 kb on - strand, within HP15_2338 at 2457.005 kb on + strand, within HP15_2338 at 2457.005 kb on + strand, within HP15_2338 at 2457.120 kb on - strand, within HP15_2338 at 2457.199 kb on - strand, within HP15_2338 at 2457.229 kb on - strand, within HP15_2338 at 2457.298 kb on - strand, within HP15_2338 at 2457.382 kb on + strand, within HP15_2338 at 2457.414 kb on - strand, within HP15_2338 at 2457.576 kb on - strand at 2457.679 kb on + strand, within HP15_2339 at 2457.710 kb on + strand at 2457.718 kb on + strand, within HP15_2339 at 2457.855 kb on + strand, within HP15_2339 at 2457.946 kb on + strand, within HP15_2339 at 2457.957 kb on + strand, within HP15_2339 at 2457.965 kb on - strand, within HP15_2339 at 2458.041 kb on - strand, within HP15_2339 at 2458.062 kb on + strand, within HP15_2339 at 2458.065 kb on - strand, within HP15_2339 at 2458.070 kb on - strand, within HP15_2339 at 2458.070 kb on - strand, within HP15_2339 at 2458.135 kb on - strand, within HP15_2339 at 2458.157 kb on - strand, within HP15_2339 at 2458.269 kb on + strand at 2458.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 2,455,814 + -0.8 2,455,814 + +0.9 2,455,822 - +0.5 2,455,904 - -0.5 2,455,906 + -0.5 2,455,994 + HP15_2337 0.16 -1.0 2,456,013 - HP15_2337 0.18 +0.8 2,456,103 - HP15_2337 0.27 -0.1 2,456,164 - HP15_2337 0.34 -0.1 2,456,180 - HP15_2337 0.35 -0.1 2,456,206 + HP15_2337 0.38 +1.4 2,456,332 + HP15_2337 0.51 +0.2 2,456,510 - HP15_2337 0.69 -1.0 2,456,591 - HP15_2337 0.77 +1.2 2,456,756 + -0.4 2,456,806 + -0.5 2,456,806 + +1.8 2,456,902 + HP15_2338 0.13 -1.6 2,456,933 - HP15_2338 0.17 -1.3 2,456,958 - HP15_2338 0.21 +0.3 2,457,005 + HP15_2338 0.27 -1.9 2,457,005 + HP15_2338 0.27 -0.3 2,457,120 - HP15_2338 0.43 +0.9 2,457,199 - HP15_2338 0.54 -0.2 2,457,229 - HP15_2338 0.58 +0.1 2,457,298 - HP15_2338 0.67 -1.5 2,457,382 + HP15_2338 0.79 -0.3 2,457,414 - HP15_2338 0.83 -0.1 2,457,576 - +0.9 2,457,679 + HP15_2339 0.15 -0.2 2,457,710 + -0.8 2,457,718 + HP15_2339 0.21 -0.4 2,457,855 + HP15_2339 0.40 -0.1 2,457,946 + HP15_2339 0.53 +3.5 2,457,957 + HP15_2339 0.55 -0.1 2,457,965 - HP15_2339 0.56 -0.2 2,458,041 - HP15_2339 0.67 +1.0 2,458,062 + HP15_2339 0.70 -0.2 2,458,065 - HP15_2339 0.70 -0.0 2,458,070 - HP15_2339 0.71 -0.5 2,458,070 - HP15_2339 0.71 -0.1 2,458,135 - HP15_2339 0.80 +1.0 2,458,157 - HP15_2339 0.83 -0.1 2,458,269 + -0.1 2,458,358 - -1.2
Or see this region's nucleotide sequence