Experiment: m.b. Carbenicillin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2044 and HP15_2045 are separated by 208 nucleotides HP15_2045 and HP15_2046 are separated by 13 nucleotides HP15_2046 and HP15_2047 are separated by 17 nucleotides
HP15_2044: HP15_2044 - aspartyl-tRNA synthetase, at 2,142,348 to 2,144,156
_2044
HP15_2045: HP15_2045 - DNA-binding transcriptional repressor FabR, at 2,144,365 to 2,144,982
_2045
HP15_2046: HP15_2046 - histidine triad (HIT) protein, at 2,144,996 to 2,145,436
_2046
HP15_2047: HP15_2047 - UDP-glucose 6-dehydrogenase, at 2,145,454 to 2,146,797
_2047
Position (kb)
2144
2145 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2144.569 kb on + strand, within HP15_2045 at 2144.588 kb on - strand, within HP15_2045 at 2144.715 kb on + strand, within HP15_2045 at 2144.800 kb on + strand, within HP15_2045 at 2144.910 kb on + strand, within HP15_2045 at 2144.930 kb on - strand at 2144.964 kb on - strand at 2144.989 kb on - strand at 2145.099 kb on + strand, within HP15_2046 at 2145.100 kb on + strand, within HP15_2046 at 2145.128 kb on - strand, within HP15_2046 at 2145.128 kb on - strand, within HP15_2046 at 2145.217 kb on - strand, within HP15_2046 at 2145.324 kb on - strand, within HP15_2046 at 2145.461 kb on + strand at 2145.469 kb on - strand at 2145.469 kb on - strand at 2145.469 kb on - strand at 2145.607 kb on - strand, within HP15_2047 at 2145.668 kb on - strand, within HP15_2047 at 2145.683 kb on - strand, within HP15_2047 at 2145.773 kb on + strand, within HP15_2047 at 2145.784 kb on + strand, within HP15_2047 at 2145.875 kb on + strand, within HP15_2047
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml remove 2,144,569 + HP15_2045 0.33 -0.3 2,144,588 - HP15_2045 0.36 +0.7 2,144,715 + HP15_2045 0.57 +0.9 2,144,800 + HP15_2045 0.70 +0.4 2,144,910 + HP15_2045 0.88 +0.6 2,144,930 - +0.9 2,144,964 - +0.5 2,144,989 - -0.2 2,145,099 + HP15_2046 0.23 -2.8 2,145,100 + HP15_2046 0.24 -0.2 2,145,128 - HP15_2046 0.30 +0.0 2,145,128 - HP15_2046 0.30 -0.5 2,145,217 - HP15_2046 0.50 -0.1 2,145,324 - HP15_2046 0.74 -0.4 2,145,461 + +1.5 2,145,469 - +0.5 2,145,469 - -0.5 2,145,469 - +0.3 2,145,607 - HP15_2047 0.11 +0.1 2,145,668 - HP15_2047 0.16 -0.7 2,145,683 - HP15_2047 0.17 -0.9 2,145,773 + HP15_2047 0.24 -0.1 2,145,784 + HP15_2047 0.25 +0.2 2,145,875 + HP15_2047 0.31 -0.7
Or see this region's nucleotide sequence