Strain Fitness in Marinobacter adhaerens HP15 around HP15_1740

Experiment: m.b. Carbenicillin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1738 and HP15_1739 are separated by 38 nucleotidesHP15_1739 and HP15_1740 are separated by 53 nucleotidesHP15_1740 and HP15_1741 are separated by 38 nucleotidesHP15_1741 and HP15_1742 are separated by 245 nucleotides HP15_1738: HP15_1738 - hypothetical protein, at 1,836,277 to 1,836,408 _1738 HP15_1739: HP15_1739 - membrane protein containing DUF6, transmembrane, at 1,836,447 to 1,837,325 _1739 HP15_1740: HP15_1740 - enoyl-CoA hydratase/isomerase, at 1,837,379 to 1,838,182 _1740 HP15_1741: HP15_1741 - hypothetical protein, at 1,838,221 to 1,838,583 _1741 HP15_1742: HP15_1742 - secreted protein, at 1,838,829 to 1,839,464 _1742 Position (kb) 1837 1838 1839Strain fitness (log2 ratio) -2 -1 0 1 2at 1836.399 kb on - strandat 1836.419 kb on + strandat 1836.422 kb on - strandat 1836.478 kb on + strandat 1836.606 kb on + strand, within HP15_1739at 1836.657 kb on + strand, within HP15_1739at 1836.665 kb on - strand, within HP15_1739at 1836.665 kb on - strand, within HP15_1739at 1836.677 kb on - strand, within HP15_1739at 1836.818 kb on - strand, within HP15_1739at 1836.836 kb on - strand, within HP15_1739at 1836.896 kb on - strand, within HP15_1739at 1836.938 kb on + strand, within HP15_1739at 1836.981 kb on + strand, within HP15_1739at 1837.025 kb on + strand, within HP15_1739at 1837.033 kb on - strand, within HP15_1739at 1837.033 kb on - strand, within HP15_1739at 1837.033 kb on - strand, within HP15_1739at 1837.033 kb on - strand, within HP15_1739at 1837.084 kb on - strand, within HP15_1739at 1837.084 kb on - strand, within HP15_1739at 1837.333 kb on - strandat 1837.442 kb on + strandat 1837.487 kb on - strand, within HP15_1740at 1837.487 kb on - strand, within HP15_1740at 1837.518 kb on + strand, within HP15_1740at 1837.781 kb on + strand, within HP15_1740at 1837.789 kb on - strand, within HP15_1740at 1837.789 kb on - strand, within HP15_1740at 1837.819 kb on + strand, within HP15_1740at 1837.820 kb on - strand, within HP15_1740at 1837.890 kb on + strand, within HP15_1740at 1837.954 kb on - strand, within HP15_1740at 1838.075 kb on - strand, within HP15_1740at 1838.075 kb on - strand, within HP15_1740at 1838.112 kb on - strandat 1838.127 kb on + strandat 1838.135 kb on - strandat 1838.368 kb on - strand, within HP15_1741at 1838.450 kb on - strand, within HP15_1741at 1838.614 kb on + strandat 1838.617 kb on - strandat 1838.642 kb on - strandat 1838.658 kb on + strandat 1838.790 kb on + strandat 1838.940 kb on - strand, within HP15_1742at 1838.940 kb on - strand, within HP15_1742

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml
remove
1,836,399 - +0.5
1,836,419 + -0.8
1,836,422 - +0.6
1,836,478 + -0.6
1,836,606 + HP15_1739 0.18 +0.2
1,836,657 + HP15_1739 0.24 +0.2
1,836,665 - HP15_1739 0.25 +0.7
1,836,665 - HP15_1739 0.25 +0.8
1,836,677 - HP15_1739 0.26 +0.8
1,836,818 - HP15_1739 0.42 +0.0
1,836,836 - HP15_1739 0.44 -0.4
1,836,896 - HP15_1739 0.51 +1.6
1,836,938 + HP15_1739 0.56 -0.2
1,836,981 + HP15_1739 0.61 +0.5
1,837,025 + HP15_1739 0.66 +0.0
1,837,033 - HP15_1739 0.67 +1.0
1,837,033 - HP15_1739 0.67 +0.1
1,837,033 - HP15_1739 0.67 +1.4
1,837,033 - HP15_1739 0.67 -0.0
1,837,084 - HP15_1739 0.72 +0.3
1,837,084 - HP15_1739 0.72 +0.7
1,837,333 - -0.4
1,837,442 + +2.2
1,837,487 - HP15_1740 0.13 +0.7
1,837,487 - HP15_1740 0.13 -1.3
1,837,518 + HP15_1740 0.17 +0.2
1,837,781 + HP15_1740 0.50 +0.2
1,837,789 - HP15_1740 0.51 +0.7
1,837,789 - HP15_1740 0.51 +0.2
1,837,819 + HP15_1740 0.55 +1.3
1,837,820 - HP15_1740 0.55 +0.6
1,837,890 + HP15_1740 0.64 -0.6
1,837,954 - HP15_1740 0.72 +1.0
1,838,075 - HP15_1740 0.87 +1.3
1,838,075 - HP15_1740 0.87 +0.1
1,838,112 - +0.6
1,838,127 + +1.4
1,838,135 - +2.0
1,838,368 - HP15_1741 0.40 +2.5
1,838,450 - HP15_1741 0.63 -0.1
1,838,614 + -1.3
1,838,617 - -2.5
1,838,642 - -0.1
1,838,658 + -1.1
1,838,790 + -0.2
1,838,940 - HP15_1742 0.17 +1.1
1,838,940 - HP15_1742 0.17 +0.6

Or see this region's nucleotide sequence