Strain Fitness in Marinobacter adhaerens HP15 around HP15_1203

Experiment: m.b. Carbenicillin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1202 and HP15_1203 are separated by 639 nucleotidesHP15_1203 and HP15_1204 are separated by 252 nucleotides HP15_1202: HP15_1202 - large ATP-binding protein, at 1,241,365 to 1,243,338 _1202 HP15_1203: HP15_1203 - methyltransferase, at 1,243,978 to 1,245,054 _1203 HP15_1204: HP15_1204 - conserved hypothetical protein, at 1,245,307 to 1,246,170 _1204 Position (kb) 1243 1244 1245 1246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1242.992 kb on + strand, within HP15_1202at 1243.159 kb on + strandat 1243.161 kb on + strandat 1243.166 kb on + strandat 1243.511 kb on - strandat 1243.539 kb on - strandat 1243.565 kb on - strandat 1243.583 kb on - strandat 1243.629 kb on + strandat 1243.754 kb on + strandat 1243.784 kb on - strandat 1244.020 kb on - strandat 1244.163 kb on - strand, within HP15_1203at 1244.281 kb on - strand, within HP15_1203at 1244.298 kb on + strand, within HP15_1203at 1244.357 kb on - strand, within HP15_1203at 1244.425 kb on - strand, within HP15_1203at 1244.446 kb on + strand, within HP15_1203at 1244.554 kb on + strand, within HP15_1203at 1244.944 kb on - strand, within HP15_1203at 1244.944 kb on - strand, within HP15_1203at 1244.986 kb on + strandat 1245.013 kb on + strandat 1245.083 kb on - strandat 1245.143 kb on + strandat 1245.205 kb on + strandat 1245.213 kb on - strandat 1245.259 kb on - strandat 1245.340 kb on + strandat 1245.529 kb on - strand, within HP15_1204at 1245.576 kb on + strand, within HP15_1204at 1245.604 kb on - strand, within HP15_1204at 1245.645 kb on + strand, within HP15_1204at 1245.874 kb on + strand, within HP15_1204at 1245.884 kb on + strand, within HP15_1204at 1245.892 kb on - strand, within HP15_1204at 1245.892 kb on - strand, within HP15_1204at 1245.939 kb on + strand, within HP15_1204at 1245.961 kb on - strand, within HP15_1204at 1246.048 kb on - strand, within HP15_1204

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.004 mg/ml
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1,242,992 + HP15_1202 0.82 -0.3
1,243,159 + -0.1
1,243,161 + -0.6
1,243,166 + +0.4
1,243,511 - +0.2
1,243,539 - -0.0
1,243,565 - -0.0
1,243,583 - -1.5
1,243,629 + -1.2
1,243,754 + -1.5
1,243,784 - -0.2
1,244,020 - -0.4
1,244,163 - HP15_1203 0.17 +2.4
1,244,281 - HP15_1203 0.28 +0.3
1,244,298 + HP15_1203 0.30 +1.4
1,244,357 - HP15_1203 0.35 -2.9
1,244,425 - HP15_1203 0.42 +0.3
1,244,446 + HP15_1203 0.43 +1.1
1,244,554 + HP15_1203 0.53 -0.2
1,244,944 - HP15_1203 0.90 +0.5
1,244,944 - HP15_1203 0.90 -0.2
1,244,986 + +0.2
1,245,013 + +1.0
1,245,083 - -0.4
1,245,143 + -0.8
1,245,205 + -0.2
1,245,213 - +0.2
1,245,259 - +0.4
1,245,340 + +1.3
1,245,529 - HP15_1204 0.26 -0.2
1,245,576 + HP15_1204 0.31 +0.5
1,245,604 - HP15_1204 0.34 +1.5
1,245,645 + HP15_1204 0.39 -0.8
1,245,874 + HP15_1204 0.66 +0.1
1,245,884 + HP15_1204 0.67 +1.8
1,245,892 - HP15_1204 0.68 +1.0
1,245,892 - HP15_1204 0.68 +0.7
1,245,939 + HP15_1204 0.73 -0.0
1,245,961 - HP15_1204 0.76 -0.1
1,246,048 - HP15_1204 0.86 +0.6

Or see this region's nucleotide sequence