Strain Fitness in Shewanella amazonensis SB2B around Sama_3580

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
4,214,229	+		Sama_3577	0.84	-3.0
4,214,229	+		Sama_3577	0.84	+2.0
4,214,229	+		Sama_3577	0.84	-0.1
4,214,229	+		Sama_3577	0.84	-0.6
4,214,229	+		Sama_3577	0.84	-0.4
4,214,229	+		Sama_3577	0.84	+1.0
4,214,230	-		Sama_3577	0.84	-0.8
4,214,230	-		Sama_3577	0.84	-1.3
4,214,230	-		Sama_3577	0.84	+1.0
4,214,230	-		Sama_3577	0.84	+2.0
4,214,230	-		Sama_3577	0.84	-0.8
4,214,230	-		Sama_3577	0.84	-0.6
4,214,230	-		Sama_3577	0.84	+0.3
4,214,230	-		Sama_3577	0.84	-1.3
4,214,246	-		Sama_3577	0.86	+0.1
4,214,280	+		Sama_3577	0.89	+2.6
4,214,310	+				-0.2
4,214,310	+				+0.9
4,214,311	-				+1.4
4,214,311	-				+0.2
4,214,350	-				-0.7
4,214,405	+				+0.5
4,214,406	-				-0.1
4,214,448	-				-3.7
4,214,448	-				+0.8
4,214,457	+				-0.6
4,214,465	+				+0.5
4,214,465	+				-0.8
4,214,466	-				-0.2
4,214,466	-				-1.2
4,214,466	-				-0.6
4,214,469	+				-0.6
4,214,469	+				+0.2
4,214,469	+				-0.2
4,214,470	-				+0.7
4,214,470	-				-0.9
4,214,470	-				+0.0
4,214,485	+				-0.4
4,214,485	+				+1.0
4,214,485	+				+0.6
4,214,486	-				-0.6
4,214,486	-				+0.3
4,214,491	+				-1.1
4,214,492	-				-0.0
4,214,492	-				+1.1
4,214,496	+				-1.2
4,214,552	+		Sama_3578	0.31	-0.1
4,214,552	+		Sama_3578	0.31	-0.7
4,214,553	-		Sama_3578	0.31	-0.8
4,214,612	-		Sama_3578	0.59	-0.7
4,214,619	+		Sama_3578	0.62	+0.7
4,214,619	+		Sama_3578	0.62	+0.4
4,214,619	+		Sama_3578	0.62	+0.1
4,214,620	-		Sama_3578	0.63	-3.2
4,214,620	-		Sama_3578	0.63	+0.2
4,214,620	-		Sama_3578	0.63	+1.7
4,214,649	+		Sama_3578	0.77	+0.6
4,214,650	-		Sama_3578	0.77	-1.0
4,214,666	+		Sama_3578	0.85	-0.8
4,214,697	-				-1.7
4,214,715	+				-2.0
4,214,715	+				-1.2
4,214,715	+				-1.0
4,214,716	-				+1.2
4,214,730	-				+0.7
4,214,730	-				+0.7
4,214,982	-		Sama_3579	0.72	+2.1
4,215,022	+		Sama_3579	0.85	+0.5
4,215,023	-		Sama_3579	0.86	-0.4
4,215,023	-		Sama_3579	0.86	-0.4
4,215,086	+				-0.6
4,215,086	+				-1.3
4,215,109	+				-0.3
4,215,109	+				-0.3
4,215,109	+				-0.9
4,215,109	+				-0.8
4,215,109	+				+0.4
4,215,109	+				-0.3
4,215,110	-				+0.6
4,215,110	-				-1.4
4,215,110	-				-1.3
4,215,110	-				+1.0
4,215,169	+				+2.0
4,215,170	-				-1.1
4,215,170	-				-0.3
4,215,171	+				+1.0
4,215,171	+				+0.3
4,215,171	+				-0.4
4,215,171	+				-2.0
4,215,171	+				+0.1
4,215,171	+				-1.0
4,215,171	+				-0.6
4,215,172	-				+1.2
4,215,172	-				+0.9
4,215,172	-				-0.3
4,215,172	-				-1.3
4,215,172	-				+0.5
4,215,172	-				+0.1
4,215,212	+				-0.8
4,215,213	-				+1.2
4,215,213	-				-0.6
4,215,213	-				-2.2
4,215,313	+		Sama_3580	0.21	+1.0
4,215,313	+		Sama_3580	0.21	+0.3
4,215,313	+		Sama_3580	0.21	-1.0
4,215,314	-		Sama_3580	0.21	-2.3
4,215,314	-		Sama_3580	0.21	-1.8
4,215,314	-		Sama_3580	0.21	+1.3
4,215,314	-		Sama_3580	0.21	-1.3
4,215,314	-		Sama_3580	0.21	-0.7
4,215,314	-		Sama_3580	0.21	+1.5
4,215,314	-		Sama_3580	0.21	+0.9
4,215,314	-		Sama_3580	0.21	+0.6
4,215,326	+		Sama_3580	0.24	+0.1
4,215,326	+		Sama_3580	0.24	-1.1
4,215,326	+		Sama_3580	0.24	-0.0
4,215,326	+		Sama_3580	0.24	-0.4
4,215,327	-		Sama_3580	0.24	+0.0
4,215,327	-		Sama_3580	0.24	-0.6
4,215,334	+		Sama_3580	0.26	-0.8
4,215,334	+		Sama_3580	0.26	+0.9
4,215,334	+		Sama_3580	0.26	+1.7
4,215,334	+		Sama_3580	0.26	-1.6
4,215,335	-		Sama_3580	0.26	-1.4
4,215,369	+		Sama_3580	0.34	-0.2
4,215,369	+		Sama_3580	0.34	-0.1
4,215,369	+		Sama_3580	0.34	-0.6
4,215,370	-		Sama_3580	0.34	+0.4
4,215,435	+		Sama_3580	0.49	-1.3
4,215,435	+		Sama_3580	0.49	-0.3
4,215,435	+		Sama_3580	0.49	-0.8
4,215,436	-		Sama_3580	0.50	-1.4
4,215,436	-		Sama_3580	0.50	-3.1
4,215,436	-		Sama_3580	0.50	-0.5
4,215,462	+		Sama_3580	0.56	+0.0
4,215,462	+		Sama_3580	0.56	-0.1
4,215,462	+		Sama_3580	0.56	-0.4
4,215,463	-		Sama_3580	0.56	-1.1
4,215,463	-		Sama_3580	0.56	+2.6
4,215,463	-		Sama_3580	0.56	-0.8
4,215,463	-		Sama_3580	0.56	+1.3
4,215,463	-		Sama_3580	0.56	+0.2
4,215,463	-		Sama_3580	0.56	-1.8
4,215,463	-		Sama_3580	0.56	+0.7
4,215,463	-		Sama_3580	0.56	-1.7
4,215,516	-		Sama_3580	0.68	-0.3
4,215,551	+		Sama_3580	0.77	-1.4
4,215,552	-		Sama_3580	0.77	-0.8
4,215,586	+		Sama_3580	0.85	+2.3
4,215,586	+		Sama_3580	0.85	-1.2
4,215,586	+		Sama_3580	0.85	-0.5
4,215,586	+		Sama_3580	0.85	-0.8
4,215,586	+		Sama_3580	0.85	+0.7
4,215,586	+		Sama_3580	0.85	-1.7
4,215,586	+		Sama_3580	0.85	+0.5
4,215,586	+		Sama_3580	0.85	+1.2
4,215,586	+		Sama_3580	0.85	-1.8
4,215,586	+		Sama_3580	0.85	+1.6
4,215,587	-		Sama_3580	0.85	-0.1
4,215,587	-		Sama_3580	0.85	-0.8
4,215,587	-		Sama_3580	0.85	-1.0
4,215,587	-		Sama_3580	0.85	-0.5
4,215,587	-		Sama_3580	0.85	+0.2
4,215,587	-		Sama_3580	0.85	+0.0
4,215,588	+		Sama_3580	0.85	+1.1
4,215,588	+		Sama_3580	0.85	-0.6
4,215,588	+		Sama_3580	0.85	+0.8
4,215,589	-		Sama_3580	0.85	+0.2
4,215,589	-		Sama_3580	0.85	-0.7
4,215,589	-		Sama_3580	0.85	-0.8
4,215,589	-		Sama_3580	0.85	-0.1
4,215,589	-		Sama_3580	0.85	-0.5
4,215,589	-		Sama_3580	0.85	-3.5
4,215,642	-				+0.0
4,215,648	+				-1.9
4,215,649	-				+3.9
4,215,667	-				-1.3
4,215,667	-				+2.4
4,215,697	+				-1.7
4,215,697	+				+0.5
4,215,698	-				+0.7
4,215,698	-				-0.8
4,215,698	-				-1.6
4,215,698	-				+2.6
4,215,733	+				+1.4
4,215,734	-				-0.2
4,215,734	-				-0.4
4,215,740	+				+0.2
4,215,830	-				-1.1
4,215,867	+				+0.5
4,215,867	+				+2.9
4,215,867	+				-0.8
4,215,867	+				-1.0
4,215,867	+				+0.7
4,215,867	+				+0.3
4,215,868	-				+0.1
4,215,868	-				+0.2
4,215,871	+				+0.1
4,215,871	+				+1.1
4,215,871	+				-0.4
4,215,871	+				+1.7
4,215,871	+				-0.7
4,215,871	+				-1.8
4,215,872	-				+0.0
4,215,872	-				-1.2
4,215,872	-				+1.3
4,215,872	-				-0.4
4,215,872	-				-2.9
4,215,872	-				-1.0
4,215,872	-				-1.3
4,215,872	-				-0.3
4,215,881	+				-0.4
4,215,887	-				+1.3
4,215,929	+				+1.6
4,215,929	+				-0.3
4,215,929	+				+2.5
4,215,929	+				-1.7
4,215,929	+				+1.8
4,215,929	+				-0.5
4,215,930	-				-0.2
4,215,930	-				+0.5
4,215,930	-				-0.5
4,215,930	-				+0.6
4,215,930	-				-1.6
4,215,930	-				-0.8
4,215,932	+				+0.9
4,215,932	+				-0.1
4,215,932	+				+0.6
4,216,000	+				-0.2
4,216,001	-				+1.4
4,216,001	-				-0.8
4,216,037	+				-0.2
4,216,037	+				-1.4
4,216,087	+				+0.2
4,216,087	+				+0.4
4,216,087	+				+1.5
4,216,087	+				+1.4
4,216,087	+				+0.0
4,216,087	+				+0.4
4,216,088	-				-0.7
4,216,089	+				+0.2
4,216,089	+				+0.0
4,216,089	+				+0.2
4,216,090	-				+0.5
4,216,090	-				-2.4
4,216,090	-				+3.1
4,216,135	-				-1.3
4,216,140	+				-0.7
4,216,277	+		Sama_3581	0.12	+0.3
4,216,278	-		Sama_3581	0.12	-0.2
4,216,278	-		Sama_3581	0.12	-1.0
4,216,278	-		Sama_3581	0.12	-1.5
4,216,283	-		Sama_3581	0.13	-1.7
4,216,283	-		Sama_3581	0.13	-0.5
4,216,337	-		Sama_3581	0.19	-2.9
4,216,350	+		Sama_3581	0.20	+0.3
4,216,351	-		Sama_3581	0.20	+0.3
4,216,357	+		Sama_3581	0.21	+0.2
4,216,357	+		Sama_3581	0.21	+0.3
4,216,357	+		Sama_3581	0.21	+0.8
4,216,357	+		Sama_3581	0.21	+1.1
4,216,357	+		Sama_3581	0.21	-0.2
4,216,357	+		Sama_3581	0.21	+0.7
4,216,357	+		Sama_3581	0.21	+0.2
4,216,358	-		Sama_3581	0.21	+0.6
4,216,358	-		Sama_3581	0.21	+1.4
4,216,358	-		Sama_3581	0.21	-0.6
4,216,414	-		Sama_3581	0.27	+0.6
4,216,414	-		Sama_3581	0.27	+0.5
4,216,414	-		Sama_3581	0.27	+1.3
4,216,450	+		Sama_3581	0.31	-2.0
4,216,450	+		Sama_3581	0.31	+1.8
4,216,459	+		Sama_3581	0.32	+0.4
4,216,459	+		Sama_3581	0.32	+0.2
4,216,494	+		Sama_3581	0.35	+0.5
4,216,495	-		Sama_3581	0.35	+0.2
4,216,495	-		Sama_3581	0.35	+0.1
4,216,495	-		Sama_3581	0.35	-0.9
4,216,534	+		Sama_3581	0.40	-0.7
4,216,535	-		Sama_3581	0.40	-0.0
4,216,535	-		Sama_3581	0.40	-1.8
4,216,557	+		Sama_3581	0.42	+0.5
4,216,557	+		Sama_3581	0.42	+0.6
4,216,557	+		Sama_3581	0.42	-1.5
4,216,557	+		Sama_3581	0.42	+0.4
4,216,557	+		Sama_3581	0.42	+0.5
4,216,557	+		Sama_3581	0.42	+0.2
4,216,558	-		Sama_3581	0.42	-0.4
4,216,640	+		Sama_3581	0.51	+0.3