Strain Fitness in Shewanella amazonensis SB2B around Sama_3354

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
3,981,267	+				+1.1
3,981,267	+				-1.7
3,981,268	-				+1.0
3,981,268	-				-0.1
3,981,268	-				+0.4
3,981,292	+				-1.5
3,981,292	+				+1.2
3,981,292	+				+1.8
3,981,293	-				+0.4
3,981,293	-				-0.2
3,981,293	-				+0.6
3,981,294	+				+2.3
3,981,295	-				+1.3
3,981,295	-				+1.6
3,981,295	-				+0.6
3,981,295	-				+3.2
3,981,372	-		Sama_3353	0.13	+0.8
3,981,482	+		Sama_3353	0.26	+1.3
3,981,483	-		Sama_3353	0.26	+1.2
3,981,509	-		Sama_3353	0.29	+0.1
3,981,587	+		Sama_3353	0.38	+1.4
3,981,587	+		Sama_3353	0.38	+1.8
3,981,587	+		Sama_3353	0.38	-0.3
3,981,588	-		Sama_3353	0.38	-1.3
3,981,588	-		Sama_3353	0.38	+0.4
3,981,588	-		Sama_3353	0.38	+1.3
3,981,610	+		Sama_3353	0.41	+1.1
3,981,610	+		Sama_3353	0.41	+1.2
3,981,610	+		Sama_3353	0.41	+1.3
3,981,610	+		Sama_3353	0.41	+1.9
3,981,611	-		Sama_3353	0.41	+1.2
3,981,611	-		Sama_3353	0.41	+0.8
3,981,611	-		Sama_3353	0.41	+2.1
3,981,839	+		Sama_3353	0.68	+2.4
3,981,839	+		Sama_3353	0.68	+0.9
3,981,839	+		Sama_3353	0.68	+1.3
3,981,839	+		Sama_3353	0.68	+0.3
3,981,901	+		Sama_3353	0.75	+0.8
3,981,950	-		Sama_3353	0.81	+0.9
3,981,962	-		Sama_3353	0.82	+0.1
3,982,071	-				-0.0
3,982,088	-				+0.9
3,982,088	-				+1.0
3,982,088	-				+0.6
3,982,089	+				+1.6
3,982,089	+				+0.1
3,982,089	+				+1.4
3,982,089	+				+1.0
3,982,089	+				+2.3
3,982,090	-				-0.5
3,982,090	-				+0.9
3,982,090	-				+1.3
3,982,090	-				+1.7
3,982,111	+				+0.8
3,982,111	+				-0.6
3,982,111	+				+3.4
3,982,111	+				+1.5
3,982,111	+				+1.5
3,982,111	+				+1.9
3,982,111	+				+0.7
3,982,111	+				+1.6
3,982,111	+				-0.4
3,982,111	+				-1.6
3,982,111	+				+1.8
3,982,111	+				+1.2
3,982,112	-				-0.2
3,982,112	-				+1.2
3,982,112	-				+1.5
3,982,112	-				+1.8
3,982,112	-				+0.7
3,982,112	-				+1.0
3,982,112	-				+0.6
3,982,112	-				+0.2
3,982,112	-				+2.2
3,982,112	-				-0.1
3,982,112	-				+0.2
3,982,115	+				+1.9
3,982,115	+				+0.1
3,982,115	+				+1.2
3,982,115	+				-0.6
3,982,116	-				+1.4
3,982,116	-				+0.6
3,982,116	-				+1.2
3,982,126	+				+1.8
3,982,180	+				+0.9
3,982,180	+				+2.1
3,982,180	+				+0.5
3,982,180	+				+0.2
3,982,180	+				-0.2
3,982,180	+				+0.8
3,982,180	+				+0.2
3,982,181	-				-1.2
3,982,181	-				-0.6
3,982,181	-				-0.8
3,982,183	+				-0.8
3,982,183	+				+1.1
3,982,183	+				+1.1
3,982,183	+				-0.3
3,982,184	-				-0.2
3,982,184	-				-1.7
3,982,184	-				-2.1
3,982,228	+				+1.2
3,982,228	+				-2.2
3,982,229	-				-0.8
3,982,255	+				-0.8
3,982,347	+				-1.5
3,982,347	+				+0.2
3,982,348	-				-1.7
3,982,402	+				-0.7
3,982,515	+		Sama_3354	0.15	-1.8
3,982,515	+		Sama_3354	0.15	+0.6
3,982,515	+		Sama_3354	0.15	-1.5
3,982,515	+		Sama_3354	0.15	-1.9
3,982,550	+		Sama_3354	0.17	-3.1
3,982,551	-		Sama_3354	0.17	-1.6
3,982,551	-		Sama_3354	0.17	+0.8
3,982,578	+		Sama_3354	0.19	-1.3
3,982,620	+		Sama_3354	0.21	-2.2
3,982,620	+		Sama_3354	0.21	-0.0
3,982,620	+		Sama_3354	0.21	-2.9
3,982,621	-		Sama_3354	0.21	-2.4
3,982,621	-		Sama_3354	0.21	-2.2
3,982,621	-		Sama_3354	0.21	-2.0
3,982,621	-		Sama_3354	0.21	-0.7
3,982,621	-		Sama_3354	0.21	-1.2
3,982,701	+		Sama_3354	0.26	-3.4
3,982,702	-		Sama_3354	0.26	-1.4
3,982,702	-		Sama_3354	0.26	-1.0
3,982,787	+		Sama_3354	0.30	-3.9
3,982,787	+		Sama_3354	0.30	-0.4
3,982,787	+		Sama_3354	0.30	-2.1
3,982,787	+		Sama_3354	0.30	-0.6
3,982,788	-		Sama_3354	0.31	-1.0
3,982,788	-		Sama_3354	0.31	-1.8
3,982,788	-		Sama_3354	0.31	-0.2
3,982,812	+		Sama_3354	0.32	-0.9
3,982,812	+		Sama_3354	0.32	-1.5
3,982,812	+		Sama_3354	0.32	-1.1
3,982,812	+		Sama_3354	0.32	-3.0
3,982,812	+		Sama_3354	0.32	-3.4
3,982,812	+		Sama_3354	0.32	-2.0
3,982,813	-		Sama_3354	0.32	-2.5
3,982,813	-		Sama_3354	0.32	-1.5
3,982,813	-		Sama_3354	0.32	+0.8
3,982,813	-		Sama_3354	0.32	-0.8
3,982,813	-		Sama_3354	0.32	-1.3
3,982,813	-		Sama_3354	0.32	-3.9
3,982,813	-		Sama_3354	0.32	-2.4
3,982,813	-		Sama_3354	0.32	-1.7
3,982,839	-		Sama_3354	0.33	-2.3
3,982,851	+		Sama_3354	0.34	+0.3
3,982,851	+		Sama_3354	0.34	-2.5
3,982,851	+		Sama_3354	0.34	-0.7
3,982,851	+		Sama_3354	0.34	-2.9
3,982,851	+		Sama_3354	0.34	-1.8
3,982,852	-		Sama_3354	0.34	-1.0
3,982,877	-		Sama_3354	0.36	-2.2
3,982,971	+		Sama_3354	0.41	-0.7
3,983,032	-		Sama_3354	0.44	-3.5
3,983,051	-		Sama_3354	0.45	-1.4
3,983,130	+		Sama_3354	0.50	-3.4
3,983,131	-		Sama_3354	0.50	-2.9
3,983,162	+		Sama_3354	0.51	-1.4
3,983,166	-		Sama_3354	0.52	-0.6
3,983,166	-		Sama_3354	0.52	-0.4
3,983,244	+		Sama_3354	0.56	-1.9
3,983,244	+		Sama_3354	0.56	-2.0
3,983,244	+		Sama_3354	0.56	-1.8
3,983,244	+		Sama_3354	0.56	-1.7
3,983,244	+		Sama_3354	0.56	-2.3
3,983,244	+		Sama_3354	0.56	-1.8
3,983,244	+		Sama_3354	0.56	-1.9
3,983,245	-		Sama_3354	0.56	-1.4
3,983,245	-		Sama_3354	0.56	-2.4
3,983,245	-		Sama_3354	0.56	-2.5
3,983,245	-		Sama_3354	0.56	-3.2
3,983,245	-		Sama_3354	0.56	-2.0
3,983,265	+		Sama_3354	0.57	-0.2
3,983,265	+		Sama_3354	0.57	-2.2
3,983,266	-		Sama_3354	0.57	-1.1
3,983,266	-		Sama_3354	0.57	-2.5
3,983,266	-		Sama_3354	0.57	-0.8
3,983,266	-		Sama_3354	0.57	-2.4
3,983,266	-		Sama_3354	0.57	-0.6
3,983,266	-		Sama_3354	0.57	+0.8
3,983,282	+		Sama_3354	0.58	-2.0
3,983,283	-		Sama_3354	0.58	-1.6
3,983,283	-		Sama_3354	0.58	-2.8
3,983,341	-		Sama_3354	0.61	-2.0
3,983,353	+		Sama_3354	0.62	-0.6
3,983,369	-		Sama_3354	0.63	-0.2
3,983,415	-		Sama_3354	0.66	-1.2
3,983,460	+		Sama_3354	0.68	-2.0
3,983,474	+		Sama_3354	0.69	-3.0
3,983,474	+		Sama_3354	0.69	-1.3
3,983,474	+		Sama_3354	0.69	-3.1
3,983,475	-		Sama_3354	0.69	-4.0
3,983,475	-		Sama_3354	0.69	-3.0
3,983,475	-		Sama_3354	0.69	-1.2
3,983,475	-		Sama_3354	0.69	-1.2
3,983,607	+		Sama_3354	0.76	-3.3
3,983,607	+		Sama_3354	0.76	-0.9
3,983,607	+		Sama_3354	0.76	+0.2
3,983,607	+		Sama_3354	0.76	-0.6
3,983,607	+		Sama_3354	0.76	+0.2
3,983,607	+		Sama_3354	0.76	-1.6
3,983,607	+		Sama_3354	0.76	-2.5
3,983,608	-		Sama_3354	0.76	-1.8
3,983,608	-		Sama_3354	0.76	-2.5
3,983,608	-		Sama_3354	0.76	-1.4
3,983,608	-		Sama_3354	0.76	+0.5
3,983,608	-		Sama_3354	0.76	-2.5
3,983,609	+		Sama_3354	0.76	-3.7
3,983,609	+		Sama_3354	0.76	-0.6
3,983,609	+		Sama_3354	0.76	-1.8
3,983,610	-		Sama_3354	0.77	-1.4
3,983,610	-		Sama_3354	0.77	-1.2
3,983,632	+		Sama_3354	0.78	-1.7
3,983,633	-		Sama_3354	0.78	-2.3
3,983,633	-		Sama_3354	0.78	-2.6
3,983,690	+		Sama_3354	0.81	-1.7
3,983,690	+		Sama_3354	0.81	-1.2
3,983,690	+		Sama_3354	0.81	-2.3
3,983,691	-		Sama_3354	0.81	-2.0
3,983,694	+		Sama_3354	0.81	-0.7
3,983,694	+		Sama_3354	0.81	-0.3
3,983,694	+		Sama_3354	0.81	-1.7
3,983,694	+		Sama_3354	0.81	-2.3
3,983,694	+		Sama_3354	0.81	-0.8
3,983,695	-		Sama_3354	0.81	-0.7
3,983,695	-		Sama_3354	0.81	-1.4
3,983,695	-		Sama_3354	0.81	-1.0
3,983,695	-		Sama_3354	0.81	-2.2
3,983,695	-		Sama_3354	0.81	-1.4
3,983,695	-		Sama_3354	0.81	-1.4
3,983,695	-		Sama_3354	0.81	-0.6
3,983,695	-		Sama_3354	0.81	-1.7
3,983,695	-		Sama_3354	0.81	-1.4
3,983,695	-		Sama_3354	0.81	-2.2
3,983,695	-		Sama_3354	0.81	-1.5
3,983,697	+		Sama_3354	0.81	-0.1
3,983,745	+		Sama_3354	0.84	-2.6
3,983,754	-		Sama_3354	0.85	-1.9
3,983,764	+		Sama_3354	0.85	-1.0
3,983,764	+		Sama_3354	0.85	-2.5
3,983,765	-		Sama_3354	0.85	-3.8
3,983,821	+		Sama_3354	0.88	-2.6
3,983,822	-		Sama_3354	0.88	-2.7
3,983,858	+				-1.9
3,983,859	-				-1.0
3,983,859	-				-0.6
3,983,891	+				-1.9
3,983,947	+				-1.9
3,983,948	-				-2.6
3,984,013	+				+1.4
3,984,013	+				-0.0
3,984,013	+				+0.4
3,984,013	+				-1.0
3,984,014	-				+0.3
3,984,014	-				-1.4
3,984,014	-				+0.5
3,984,014	-				-0.3
3,984,132	+		Sama_3355	0.32	-0.4
3,984,132	+		Sama_3355	0.32	-0.7
3,984,133	-		Sama_3355	0.33	-0.1
3,984,133	-		Sama_3355	0.33	+3.5
3,984,133	-		Sama_3355	0.33	-1.0
3,984,133	-		Sama_3355	0.33	+0.9
3,984,133	-		Sama_3355	0.33	+3.1
3,984,135	+		Sama_3355	0.33	+0.8
3,984,136	-		Sama_3355	0.34	-0.2
3,984,136	-		Sama_3355	0.34	-3.1
3,984,136	-		Sama_3355	0.34	+0.2
3,984,155	+		Sama_3355	0.39	-0.7
3,984,156	-		Sama_3355	0.40	-1.1
3,984,216	+		Sama_3355	0.58	-0.4
3,984,217	-		Sama_3355	0.58	+1.8
3,984,217	-		Sama_3355	0.58	+0.3
3,984,260	+		Sama_3355	0.72	+1.7
3,984,260	+		Sama_3355	0.72	-1.2
3,984,260	+		Sama_3355	0.72	-1.8
3,984,261	-		Sama_3355	0.72	-1.8
3,984,261	-		Sama_3355	0.72	+0.5
3,984,261	-		Sama_3355	0.72	+0.2
3,984,277	+		Sama_3355	0.77	-0.7
3,984,277	+		Sama_3355	0.77	+0.9
3,984,301	+		Sama_3355	0.84	-1.8
3,984,301	+		Sama_3355	0.84	-0.1
3,984,302	-		Sama_3355	0.84	+0.6
3,984,323	-				+0.2
3,984,337	+				+2.6
3,984,337	+				+0.3
3,984,338	-				-0.0
3,984,338	-				-0.1
3,984,354	-				+2.6
3,984,429	+				-0.1
3,984,440	+				+0.3
3,984,440	+				+0.5
3,984,447	+				-1.9