Strain Fitness in Shewanella amazonensis SB2B around Sama_2513

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
3,018,221	-				-1.4
3,018,238	+				+0.7
3,018,239	-				-0.1
3,018,239	-				+1.2
3,018,257	+		Sama_2512	0.10	+1.1
3,018,292	+		Sama_2512	0.14	-0.8
3,018,292	+		Sama_2512	0.14	-0.9
3,018,293	-		Sama_2512	0.14	-0.1
3,018,381	-		Sama_2512	0.24	+0.4
3,018,381	-		Sama_2512	0.24	-0.7
3,018,381	-		Sama_2512	0.24	+1.9
3,018,396	+		Sama_2512	0.25	+0.7
3,018,413	+		Sama_2512	0.27	-1.1
3,018,414	-		Sama_2512	0.27	+0.3
3,018,414	-		Sama_2512	0.27	-1.9
3,018,417	-		Sama_2512	0.28	-0.1
3,018,417	-		Sama_2512	0.28	-1.0
3,018,417	-		Sama_2512	0.28	+0.4
3,018,437	+		Sama_2512	0.30	-0.2
3,018,437	+		Sama_2512	0.30	+0.1
3,018,438	-		Sama_2512	0.30	+0.8
3,018,438	-		Sama_2512	0.30	-0.8
3,018,438	-		Sama_2512	0.30	+1.7
3,018,438	-		Sama_2512	0.30	+1.1
3,018,438	-		Sama_2512	0.30	+1.9
3,018,476	+		Sama_2512	0.34	-2.4
3,018,476	+		Sama_2512	0.34	+0.0
3,018,477	-		Sama_2512	0.34	-0.5
3,018,477	-		Sama_2512	0.34	+1.8
3,018,477	-		Sama_2512	0.34	+0.0
3,018,477	-		Sama_2512	0.34	-0.2
3,018,477	-		Sama_2512	0.34	+0.3
3,018,477	-		Sama_2512	0.34	+2.0
3,018,478	+		Sama_2512	0.34	-0.3
3,018,478	+		Sama_2512	0.34	+1.8
3,018,478	+		Sama_2512	0.34	+0.9
3,018,479	-		Sama_2512	0.35	+0.5
3,018,479	-		Sama_2512	0.35	+0.3
3,018,479	-		Sama_2512	0.35	+0.7
3,018,479	-		Sama_2512	0.35	+0.3
3,018,492	+		Sama_2512	0.36	+0.3
3,018,492	+		Sama_2512	0.36	-1.1
3,018,536	-		Sama_2512	0.41	+0.9
3,018,536	-		Sama_2512	0.41	-3.2
3,018,536	-		Sama_2512	0.41	+1.0
3,018,566	+		Sama_2512	0.44	-0.8
3,018,567	-		Sama_2512	0.44	-0.1
3,018,567	-		Sama_2512	0.44	+1.1
3,018,576	+		Sama_2512	0.45	+0.4
3,018,577	-		Sama_2512	0.45	+0.9
3,018,577	-		Sama_2512	0.45	-2.5
3,018,577	-		Sama_2512	0.45	+0.0
3,018,674	+		Sama_2512	0.56	+0.2
3,018,697	+		Sama_2512	0.58	-2.3
3,018,697	+		Sama_2512	0.58	-0.1
3,018,698	-		Sama_2512	0.59	+1.9
3,018,698	-		Sama_2512	0.59	-0.3
3,018,744	+		Sama_2512	0.64	+0.2
3,018,744	+		Sama_2512	0.64	-1.0
3,018,744	+		Sama_2512	0.64	-0.1
3,018,753	+		Sama_2512	0.65	+0.2
3,018,754	-		Sama_2512	0.65	-1.0
3,018,764	-		Sama_2512	0.66	-2.5
3,018,821	+		Sama_2512	0.72	-1.2
3,018,822	-		Sama_2512	0.72	+0.1
3,018,822	-		Sama_2512	0.72	-0.6
3,018,822	-		Sama_2512	0.72	+0.7
3,018,831	+		Sama_2512	0.73	+0.1
3,018,832	-		Sama_2512	0.73	+1.7
3,018,846	+		Sama_2512	0.75	+1.8
3,018,899	-		Sama_2512	0.81	+1.8
3,018,899	-		Sama_2512	0.81	+1.4
3,018,943	+		Sama_2512	0.85	-1.1
3,018,943	+		Sama_2512	0.85	-1.0
3,018,985	+				-0.2
3,019,000	+				-0.0
3,019,000	+				+0.9
3,019,000	+				+0.9
3,019,049	-				+1.7
3,019,259	+		Sama_2513	0.21	+0.1
3,019,297	+		Sama_2513	0.28	-0.4
3,019,297	+		Sama_2513	0.28	+1.3
3,019,297	+		Sama_2513	0.28	-0.0
3,019,298	-		Sama_2513	0.28	-0.0
3,019,314	+		Sama_2513	0.30	-0.1
3,019,315	-		Sama_2513	0.30	+1.3
3,019,315	-		Sama_2513	0.30	+0.3
3,019,315	-		Sama_2513	0.30	-1.0
3,019,315	-		Sama_2513	0.30	+0.7
3,019,321	-		Sama_2513	0.31	+1.2
3,019,352	+		Sama_2513	0.36	+0.6
3,019,352	+		Sama_2513	0.36	+0.7
3,019,427	+		Sama_2513	0.48	+2.6
3,019,428	-		Sama_2513	0.49	+0.7
3,019,428	-		Sama_2513	0.49	+0.2
3,019,454	+		Sama_2513	0.53	+1.0
3,019,455	-		Sama_2513	0.53	+0.1
3,019,455	-		Sama_2513	0.53	+1.9
3,019,455	-		Sama_2513	0.53	-2.2
3,019,475	+		Sama_2513	0.56	-0.6
3,019,475	+		Sama_2513	0.56	+1.3
3,019,475	+		Sama_2513	0.56	+0.5
3,019,475	+		Sama_2513	0.56	+0.2
3,019,475	+		Sama_2513	0.56	+0.1
3,019,475	+		Sama_2513	0.56	-1.5
3,019,476	-		Sama_2513	0.56	+1.0
3,019,476	-		Sama_2513	0.56	-0.8
3,019,476	-		Sama_2513	0.56	+0.8
3,019,476	-		Sama_2513	0.56	+0.4
3,019,476	-		Sama_2513	0.56	-0.7
3,019,525	+		Sama_2513	0.64	+0.2
3,019,606	-		Sama_2513	0.77	+0.1
3,019,606	-		Sama_2513	0.77	-0.6
3,019,606	-		Sama_2513	0.77	+0.9
3,019,606	-		Sama_2513	0.77	-0.3
3,019,636	+		Sama_2513	0.82	-1.5
3,019,636	+		Sama_2513	0.82	+0.5
3,019,636	+		Sama_2513	0.82	+1.3
3,019,637	-		Sama_2513	0.82	+1.7
3,019,637	-		Sama_2513	0.82	+0.3
3,019,710	+				-0.2
3,019,710	+				+0.6
3,019,710	+				+0.0
3,019,711	-				+0.7
3,019,767	-				-0.9
3,019,825	+				-1.3
3,019,873	-				+1.8
3,019,959	-				+0.0
3,020,018	+				-2.4
3,020,079	+		Sama_2514	0.21	-1.2
3,020,079	+		Sama_2514	0.21	-0.6
3,020,079	+		Sama_2514	0.21	+0.2
3,020,079	+		Sama_2514	0.21	-0.2
3,020,101	+		Sama_2514	0.26	-1.3
3,020,102	-		Sama_2514	0.26	+1.7
3,020,102	-		Sama_2514	0.26	-0.4
3,020,102	-		Sama_2514	0.26	-1.7
3,020,104	+		Sama_2514	0.27	-0.4
3,020,105	-		Sama_2514	0.27	-1.0
3,020,140	+		Sama_2514	0.35	+0.0
3,020,140	+		Sama_2514	0.35	+1.8
3,020,141	-		Sama_2514	0.36	+0.1
3,020,141	-		Sama_2514	0.36	-1.4
3,020,167	+		Sama_2514	0.42	-0.8
3,020,167	+		Sama_2514	0.42	-1.0
3,020,172	-		Sama_2514	0.43	+2.1
3,020,183	+		Sama_2514	0.46	+0.8
3,020,183	+		Sama_2514	0.46	-1.6
3,020,183	+		Sama_2514	0.46	+0.7
3,020,183	+		Sama_2514	0.46	+2.3
3,020,184	-		Sama_2514	0.46	+0.0
3,020,194	+		Sama_2514	0.48	-0.1
3,020,220	+		Sama_2514	0.54	+1.8
3,020,279	+		Sama_2514	0.68	+0.4
3,020,279	+		Sama_2514	0.68	-0.8
3,020,279	+		Sama_2514	0.68	-0.3
3,020,280	-		Sama_2514	0.69	-1.6
3,020,283	+		Sama_2514	0.69	-0.2
3,020,283	+		Sama_2514	0.69	-0.3
3,020,283	+		Sama_2514	0.69	+0.5
3,020,283	+		Sama_2514	0.69	+0.7
3,020,283	+		Sama_2514	0.69	+0.4
3,020,284	-		Sama_2514	0.70	-0.6
3,020,284	-		Sama_2514	0.70	-1.5
3,020,284	-		Sama_2514	0.70	-1.0
3,020,284	-		Sama_2514	0.70	+1.2
3,020,356	+		Sama_2514	0.87	-1.2
3,020,356	+		Sama_2514	0.87	+0.9
3,020,356	+		Sama_2514	0.87	+0.6
3,020,356	+		Sama_2514	0.87	+1.1
3,020,356	+		Sama_2514	0.87	+0.9
3,020,357	-		Sama_2514	0.87	-2.0
3,020,357	-		Sama_2514	0.87	-1.2
3,020,357	-		Sama_2514	0.87	+2.0
3,020,357	-		Sama_2514	0.87	+0.7
3,020,396	+				-0.0
3,020,410	+				-1.3
3,020,410	+				-1.6
3,020,410	+				-0.4
3,020,411	-				+0.7
3,020,411	-				+0.2
3,020,411	-				+1.2
3,020,411	-				+1.5
3,020,437	+				+0.5
3,020,437	+				-0.6
3,020,437	+				-1.5
3,020,437	+				+0.6
3,020,437	+				+0.6
3,020,437	+				-0.1
3,020,438	-				-0.2
3,020,438	-				+0.2
3,020,438	-				+0.3
3,020,441	+				-0.0
3,020,457	+				+0.3
3,020,458	-				-2.9
3,020,482	-				+1.2
3,020,488	+				+0.5
3,020,488	+				+0.8
3,020,488	+				-0.1
3,020,493	-				-0.9
3,020,493	-				+1.3
3,020,493	-				+0.6
3,020,500	-				+1.9
3,020,511	+				-3.8
3,020,511	+				-3.1
3,020,511	+				-4.6
3,020,512	-				-2.9
3,020,512	-				-3.8
3,020,512	-				-2.4
3,020,533	+				-4.2
3,020,533	+				-2.8
3,020,533	+				-2.5
3,020,534	-				-3.2
3,020,534	-				-3.1
3,020,534	-				-2.3
3,020,534	-				-3.4
3,020,534	-				-3.2
3,020,534	-				-1.9
3,020,535	+				-2.1
3,020,535	+				-4.5
3,020,535	+				-3.9
3,020,535	+				-2.9
3,020,535	+				-2.2
3,020,536	-				-4.4
3,020,536	-				-3.2
3,020,536	-				-2.8
3,020,536	-				-5.6
3,020,536	-				-3.1
3,020,536	-				-2.5
3,020,536	-				-3.7
3,020,536	-				-3.3
3,020,536	-				-4.9
3,020,536	-				-1.9
3,020,536	-				-2.8
3,020,655	+	proA	Sama_2515	0.12	-1.3
3,020,671	+	proA	Sama_2515	0.14	-3.9
3,020,671	+	proA	Sama_2515	0.14	-4.3
3,020,683	+	proA	Sama_2515	0.15	-3.2
3,020,683	+	proA	Sama_2515	0.15	-2.1
3,020,742	+	proA	Sama_2515	0.19	-3.6
3,020,742	+	proA	Sama_2515	0.19	-2.5
3,020,742	+	proA	Sama_2515	0.19	-2.4
3,020,743	-	proA	Sama_2515	0.19	-3.5