Strain Fitness in Shewanella amazonensis SB2B around Sama_2014

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
2,446,779	-		Sama_2012	0.81	-2.4
2,446,831	+		Sama_2012	0.84	-0.3
2,446,832	-		Sama_2012	0.84	-1.7
2,446,838	-		Sama_2012	0.84	+0.8
2,446,838	-		Sama_2012	0.84	+0.8
2,446,874	-		Sama_2012	0.87	-2.1
2,446,918	+		Sama_2012	0.90	+0.1
2,446,919	-		Sama_2012	0.90	+0.1
2,446,979	+				-2.7
2,447,024	+				-2.6
2,447,029	+				-2.0
2,447,073	+				+0.3
2,447,073	+				+0.6
2,447,089	-				+0.1
2,447,089	-				-1.5
2,447,090	+				-1.9
2,447,091	-				+0.1
2,447,105	+				-0.4
2,447,105	+				+0.8
2,447,106	-				+0.6
2,447,106	-				+0.8
2,447,168	+				-0.9
2,447,168	+				+3.3
2,447,244	+				+2.6
2,447,253	+				-0.5
2,447,254	-				+1.6
2,447,254	-				+0.6
2,447,260	-				+0.8
2,447,310	+				+0.5
2,447,313	+				+0.6
2,447,313	+				-0.3
2,447,371	+				+0.1
2,447,371	+				-0.3
2,447,375	+				+1.3
2,447,376	-				-2.2
2,447,419	+				-1.4
2,447,419	+				+0.4
2,447,451	-				+0.5
2,447,464	+				+1.9
2,447,464	+				+1.3
2,447,476	+				-1.0
2,447,476	+				-1.4
2,447,476	+				+0.4
2,447,476	+				+1.5
2,447,476	+				-2.7
2,447,477	-				+1.0
2,447,477	-				+1.1
2,447,477	-				-0.0
2,447,510	+		Sama_2013	0.16	-0.8
2,447,510	+		Sama_2013	0.16	-1.0
2,447,510	+		Sama_2013	0.16	-0.8
2,447,511	-		Sama_2013	0.16	-2.2
2,447,674	+				-0.4
2,447,801	+				-0.1
2,447,801	+				-0.1
2,447,801	+				+0.8
2,447,801	+				+0.9
2,447,802	-				+1.1
2,447,802	-				-0.1
2,447,802	-				-0.7
2,447,802	-				-1.3
2,447,802	-				+0.9
2,447,802	-				-3.1
2,447,802	-				-2.4
2,447,802	-				+0.0
2,447,802	-				-1.0
2,447,802	-				-1.6
2,447,803	+				-2.5
2,447,803	+				-1.4
2,447,803	+				+0.8
2,447,804	-				-1.6
2,447,804	-				-2.0
2,447,804	-				-1.2
2,447,830	+				-0.5
2,447,830	+				-0.0
2,447,871	+				-0.2
2,447,933	+		Sama_2014	0.12	+0.4
2,447,933	+		Sama_2014	0.12	+0.5
2,447,956	+		Sama_2014	0.13	+0.7
2,447,956	+		Sama_2014	0.13	+0.1
2,447,956	+		Sama_2014	0.13	-0.4
2,447,956	+		Sama_2014	0.13	-0.4
2,447,957	-		Sama_2014	0.13	-1.1
2,447,957	-		Sama_2014	0.13	-0.9
2,447,957	-		Sama_2014	0.13	+0.3
2,447,958	+		Sama_2014	0.13	-0.2
2,447,958	+		Sama_2014	0.13	-1.2
2,447,958	+		Sama_2014	0.13	+1.4
2,447,959	-		Sama_2014	0.14	-1.4
2,447,959	-		Sama_2014	0.14	+1.6
2,447,959	-		Sama_2014	0.14	+0.4
2,447,959	-		Sama_2014	0.14	-0.4
2,447,959	-		Sama_2014	0.14	+0.2
2,447,959	-		Sama_2014	0.14	-1.5
2,447,959	-		Sama_2014	0.14	+1.3
2,448,000	-		Sama_2014	0.16	-1.0
2,448,020	+		Sama_2014	0.17	+0.1
2,448,021	-		Sama_2014	0.17	+1.1
2,448,021	-		Sama_2014	0.17	-2.7
2,448,082	+		Sama_2014	0.20	-3.3
2,448,083	-		Sama_2014	0.21	+1.2
2,448,092	+		Sama_2014	0.21	-1.5
2,448,093	-		Sama_2014	0.21	-0.5
2,448,093	-		Sama_2014	0.21	-0.9
2,448,093	-		Sama_2014	0.21	-0.6
2,448,097	+		Sama_2014	0.21	-0.2
2,448,097	+		Sama_2014	0.21	-0.1
2,448,097	+		Sama_2014	0.21	+0.3
2,448,098	-		Sama_2014	0.21	-0.8
2,448,098	-		Sama_2014	0.21	-1.2
2,448,098	-		Sama_2014	0.21	+0.8
2,448,126	-		Sama_2014	0.23	+0.1
2,448,126	-		Sama_2014	0.23	+0.3
2,448,126	-		Sama_2014	0.23	+1.7
2,448,126	-		Sama_2014	0.23	-0.9
2,448,126	-		Sama_2014	0.23	-0.9
2,448,130	-		Sama_2014	0.23	-1.0
2,448,267	-		Sama_2014	0.31	-1.3
2,448,267	-		Sama_2014	0.31	-0.7
2,448,267	-		Sama_2014	0.31	-0.0
2,448,267	-		Sama_2014	0.31	-0.8
2,448,270	-		Sama_2014	0.31	+0.6
2,448,365	+		Sama_2014	0.36	-2.5
2,448,366	-		Sama_2014	0.36	+2.1
2,448,459	+		Sama_2014	0.42	+0.5
2,448,459	+		Sama_2014	0.42	-0.7
2,448,459	+		Sama_2014	0.42	-0.8
2,448,460	-		Sama_2014	0.42	+0.6
2,448,460	-		Sama_2014	0.42	+0.8
2,448,460	-		Sama_2014	0.42	+0.1
2,448,460	-		Sama_2014	0.42	-0.3
2,448,460	-		Sama_2014	0.42	+0.5
2,448,460	-		Sama_2014	0.42	-1.2
2,448,460	-		Sama_2014	0.42	-1.5
2,448,460	-		Sama_2014	0.42	+1.2
2,448,460	-		Sama_2014	0.42	-0.3
2,448,465	+		Sama_2014	0.42	-1.6
2,448,465	+		Sama_2014	0.42	-0.4
2,448,465	+		Sama_2014	0.42	-0.7
2,448,466	-		Sama_2014	0.42	+1.3
2,448,470	+		Sama_2014	0.42	-1.5
2,448,591	-		Sama_2014	0.49	-0.6
2,448,623	+		Sama_2014	0.51	-0.7
2,448,624	-		Sama_2014	0.51	-1.1
2,448,672	+		Sama_2014	0.54	-0.9
2,448,672	+		Sama_2014	0.54	-1.9
2,448,672	+		Sama_2014	0.54	-0.4
2,448,672	+		Sama_2014	0.54	-1.3
2,448,672	+		Sama_2014	0.54	+0.7
2,448,672	+		Sama_2014	0.54	-0.9
2,448,673	-		Sama_2014	0.54	-0.2
2,448,673	-		Sama_2014	0.54	+0.8
2,448,673	-		Sama_2014	0.54	+0.3
2,448,673	-		Sama_2014	0.54	+1.5
2,448,673	-		Sama_2014	0.54	+0.2
2,448,673	-		Sama_2014	0.54	+0.1
2,448,673	-		Sama_2014	0.54	-1.2
2,448,762	-		Sama_2014	0.59	+1.1
2,448,762	-		Sama_2014	0.59	+1.6
2,448,771	+		Sama_2014	0.59	-0.2
2,448,771	+		Sama_2014	0.59	+0.0
2,448,771	+		Sama_2014	0.59	-1.5
2,448,771	+		Sama_2014	0.59	-2.5
2,448,771	+		Sama_2014	0.59	+0.6
2,448,771	+		Sama_2014	0.59	+1.0
2,448,771	+		Sama_2014	0.59	-0.2
2,448,771	+		Sama_2014	0.59	+1.0
2,448,771	+		Sama_2014	0.59	-0.8
2,448,771	+		Sama_2014	0.59	-0.5
2,448,771	+		Sama_2014	0.59	-0.4
2,448,772	-		Sama_2014	0.59	+0.3
2,448,772	-		Sama_2014	0.59	-0.2
2,448,772	-		Sama_2014	0.59	-0.2
2,448,772	-		Sama_2014	0.59	-0.0
2,448,772	-		Sama_2014	0.59	-3.0
2,448,772	-		Sama_2014	0.59	-1.7
2,448,772	-		Sama_2014	0.59	+0.8
2,448,772	-		Sama_2014	0.59	-0.9
2,448,772	-		Sama_2014	0.59	+0.4
2,448,772	-		Sama_2014	0.59	+0.8
2,448,772	-		Sama_2014	0.59	-0.5
2,448,772	-		Sama_2014	0.59	+0.4
2,448,772	-		Sama_2014	0.59	-0.7
2,448,772	-		Sama_2014	0.59	+0.6
2,448,772	-		Sama_2014	0.59	-1.6
2,448,772	-		Sama_2014	0.59	+1.3
2,448,772	-		Sama_2014	0.59	+0.6
2,448,772	-		Sama_2014	0.59	+1.6
2,448,772	-		Sama_2014	0.59	-0.4
2,448,772	-		Sama_2014	0.59	-1.2
2,448,772	-		Sama_2014	0.59	-0.8
2,448,830	+		Sama_2014	0.63	-0.1
2,448,831	-		Sama_2014	0.63	+0.7
2,448,969	-		Sama_2014	0.70	-1.2
2,448,982	+		Sama_2014	0.71	-1.9
2,448,983	-		Sama_2014	0.71	-0.3
2,449,031	+		Sama_2014	0.74	-0.4
2,449,031	+		Sama_2014	0.74	+0.5
2,449,031	+		Sama_2014	0.74	-0.5
2,449,031	+		Sama_2014	0.74	+1.4
2,449,031	+		Sama_2014	0.74	+0.7
2,449,032	-		Sama_2014	0.74	-3.0
2,449,032	-		Sama_2014	0.74	-1.2
2,449,054	-		Sama_2014	0.75	-1.7
2,449,066	-		Sama_2014	0.76	+0.5
2,449,066	-		Sama_2014	0.76	-0.8
2,449,121	+		Sama_2014	0.79	-3.2
2,449,178	+		Sama_2014	0.82	+0.1
2,449,179	-		Sama_2014	0.82	+0.7
2,449,179	-		Sama_2014	0.82	-0.5
2,449,279	+		Sama_2014	0.88	-0.0
2,449,280	-		Sama_2014	0.88	-0.3
2,449,335	-				+0.6
2,449,431	-				-1.1
2,449,431	-				+0.1
2,449,431	-				-1.3
2,449,517	+				-0.8
2,449,517	+				-0.1
2,449,522	+				-1.7
2,449,523	-				+0.9
2,449,523	-				-0.4
2,449,562	+				-0.3
2,449,563	-				+0.7
2,449,570	+				-0.4
2,449,571	-				-1.0
2,449,571	-				+0.4
2,449,615	-				+1.5
2,449,620	+				-3.3
2,449,681	-		Sama_2015	0.20	+0.3
2,449,702	+		Sama_2015	0.23	+0.4
2,449,702	+		Sama_2015	0.23	-0.3
2,449,703	-		Sama_2015	0.23	+0.4
2,449,703	-		Sama_2015	0.23	-1.3
2,449,703	-		Sama_2015	0.23	-0.7
2,449,703	-		Sama_2015	0.23	+0.2
2,449,703	-		Sama_2015	0.23	-0.5
2,449,703	-		Sama_2015	0.23	+0.0
2,449,703	-		Sama_2015	0.23	+0.3
2,449,703	-		Sama_2015	0.23	-0.5
2,449,707	+		Sama_2015	0.24	-1.0
2,449,708	-		Sama_2015	0.24	+1.1
2,449,711	+		Sama_2015	0.25	-0.6
2,449,711	+		Sama_2015	0.25	+0.1
2,449,712	-		Sama_2015	0.25	+0.9
2,449,762	-		Sama_2015	0.33	-0.7
2,449,849	-		Sama_2015	0.47	-1.6
2,449,909	+		Sama_2015	0.57	+0.0
2,449,909	+		Sama_2015	0.57	+0.0
2,449,909	+		Sama_2015	0.57	-0.1
2,449,910	-		Sama_2015	0.57	-0.3
2,450,023	+		Sama_2015	0.76	-2.5
2,450,024	-		Sama_2015	0.76	+0.2
2,450,034	+		Sama_2015	0.78	-0.4
2,450,115	+				+0.6
2,450,115	+				-1.6
2,450,115	+				-1.8
2,450,116	-				+0.6
2,450,129	-				-0.6
2,450,194	+				-0.0
2,450,199	+				+0.1
2,450,229	+				+0.9
2,450,230	-				+1.9
2,450,231	+				+0.9
2,450,232	+				-1.2
2,450,232	+				-2.9
2,450,232	+				+0.3
2,450,233	-				-0.7
2,450,233	-				-1.7
2,450,235	-				-0.9
2,450,262	+				-1.2
2,450,263	-				-0.3
2,450,274	+				-1.5
2,450,289	+				+0.3
2,450,290	-				-0.8
2,450,313	+				+1.0
2,450,313	+				-1.1
2,450,313	+				+0.2
2,450,314	-				-2.0
2,450,317	+				+0.4
2,450,317	+				+0.6
2,450,317	+				-0.3
2,450,317	+				+0.9
2,450,317	+				-2.0
2,450,318	-				+0.0
2,450,318	-				-0.1
2,450,339	+				-0.6
2,450,339	+				+0.5
2,450,340	-				+0.3
2,450,340	-				+0.8
2,450,340	-				-2.8
2,450,446	+		Sama_2016	0.13	-0.8
2,450,448	+		Sama_2016	0.13	+0.4
2,450,448	+		Sama_2016	0.13	-2.1
2,450,448	+		Sama_2016	0.13	-0.2
2,450,448	+		Sama_2016	0.13	-1.4
2,450,486	+		Sama_2016	0.16	+1.0
2,450,486	+		Sama_2016	0.16	-0.5