Strain Fitness in Shewanella amazonensis SB2B around Sama_0980

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
1,183,146	+				-0.3
1,183,147	-				+0.6
1,183,147	-				+0.2
1,183,180	+		Sama_0979	0.11	+0.4
1,183,180	+		Sama_0979	0.11	-2.6
1,183,259	+		Sama_0979	0.19	-0.3
1,183,265	+		Sama_0979	0.20	-1.4
1,183,316	+		Sama_0979	0.25	+0.5
1,183,317	-		Sama_0979	0.25	+1.3
1,183,317	-		Sama_0979	0.25	+0.6
1,183,317	-		Sama_0979	0.25	-2.2
1,183,317	-		Sama_0979	0.25	+0.1
1,183,317	-		Sama_0979	0.25	+0.0
1,183,317	-		Sama_0979	0.25	+0.3
1,183,317	-		Sama_0979	0.25	+0.1
1,183,348	+		Sama_0979	0.28	-0.1
1,183,407	+		Sama_0979	0.34	-2.4
1,183,407	+		Sama_0979	0.34	-0.2
1,183,417	-		Sama_0979	0.35	-0.0
1,183,417	-		Sama_0979	0.35	+1.4
1,183,458	+		Sama_0979	0.39	-0.2
1,183,458	+		Sama_0979	0.39	+1.3
1,183,458	+		Sama_0979	0.39	+0.0
1,183,515	-		Sama_0979	0.45	+1.8
1,183,545	+		Sama_0979	0.48	-1.9
1,183,572	+		Sama_0979	0.51	+0.4
1,183,572	+		Sama_0979	0.51	+0.1
1,183,572	+		Sama_0979	0.51	-1.3
1,183,573	-		Sama_0979	0.51	+2.1
1,183,656	-		Sama_0979	0.60	+0.1
1,183,660	-		Sama_0979	0.60	+1.0
1,183,699	+		Sama_0979	0.64	+1.0
1,183,700	-		Sama_0979	0.64	-0.3
1,183,700	-		Sama_0979	0.64	-2.2
1,183,720	+		Sama_0979	0.66	+0.3
1,183,721	-		Sama_0979	0.66	-2.0
1,183,746	+		Sama_0979	0.69	+0.7
1,183,746	+		Sama_0979	0.69	-1.3
1,183,769	+		Sama_0979	0.71	-1.3
1,183,770	-		Sama_0979	0.71	-2.5
1,183,795	+		Sama_0979	0.74	-0.5
1,183,795	+		Sama_0979	0.74	-2.4
1,183,796	-		Sama_0979	0.74	+3.5
1,183,813	+		Sama_0979	0.76	-0.8
1,183,831	+		Sama_0979	0.78	+0.2
1,183,832	-		Sama_0979	0.78	+0.8
1,183,900	+		Sama_0979	0.85	+0.6
1,183,937	+		Sama_0979	0.88	+0.9
1,183,937	+		Sama_0979	0.88	+1.5
1,183,995	+				+0.6
1,183,996	-				+0.3
1,184,020	+				+0.3
1,184,111	+				-1.3
1,184,111	+				-1.1
1,184,111	+				-0.3
1,184,112	-				+0.7
1,184,120	+				+0.8
1,184,120	+				-2.0
1,184,121	-				+0.0
1,184,121	-				-0.1
1,184,121	-				+0.3
1,184,177	+				-0.2
1,184,177	+				+0.1
1,184,177	+				+0.4
1,184,178	-				+0.0
1,184,178	-				-0.6
1,184,178	-				+1.7
1,184,178	-				-0.1
1,184,183	+				-1.2
1,184,183	+				+1.4
1,184,183	+				+0.4
1,184,183	+				+1.2
1,184,183	+				-1.6
1,184,183	+				-1.3
1,184,183	+				+1.1
1,184,183	+				+0.8
1,184,183	+				+1.0
1,184,183	+				-1.3
1,184,183	+				-0.2
1,184,184	-				+0.2
1,184,184	-				-0.6
1,184,184	-				+0.8
1,184,184	-				-0.4
1,184,184	-				+0.5
1,184,184	-				-0.6
1,184,184	-				+0.2
1,184,184	-				+0.2
1,184,184	-				-0.5
1,184,184	-				+0.2
1,184,184	-				+1.0
1,184,184	-				-0.3
1,184,263	+				-0.0
1,184,275	+				-0.3
1,184,346	-		Sama_0980	0.12	+0.0
1,184,366	+		Sama_0980	0.13	-3.9
1,184,366	+		Sama_0980	0.13	-0.8
1,184,366	+		Sama_0980	0.13	-0.4
1,184,366	+		Sama_0980	0.13	+0.5
1,184,366	+		Sama_0980	0.13	-0.4
1,184,366	+		Sama_0980	0.13	+1.3
1,184,366	+		Sama_0980	0.13	-1.9
1,184,367	-		Sama_0980	0.13	-0.9
1,184,367	-		Sama_0980	0.13	-1.5
1,184,367	-		Sama_0980	0.13	+1.2
1,184,367	-		Sama_0980	0.13	+0.1
1,184,367	-		Sama_0980	0.13	+3.2
1,184,367	-		Sama_0980	0.13	+0.1
1,184,391	+		Sama_0980	0.14	+0.4
1,184,391	+		Sama_0980	0.14	-0.6
1,184,391	+		Sama_0980	0.14	-0.8
1,184,392	-		Sama_0980	0.14	-0.0
1,184,392	-		Sama_0980	0.14	+0.1
1,184,392	-		Sama_0980	0.14	+0.3
1,184,424	-		Sama_0980	0.15	-0.7
1,184,424	-		Sama_0980	0.15	+0.2
1,184,436	-		Sama_0980	0.16	+0.1
1,184,436	-		Sama_0980	0.16	+0.5
1,184,450	+		Sama_0980	0.16	-1.4
1,184,479	+		Sama_0980	0.18	+0.9
1,184,479	+		Sama_0980	0.18	+1.5
1,184,480	-		Sama_0980	0.18	+0.4
1,184,480	-		Sama_0980	0.18	-0.3
1,184,480	-		Sama_0980	0.18	-0.6
1,184,481	+		Sama_0980	0.18	+0.1
1,184,481	+		Sama_0980	0.18	-0.4
1,184,481	+		Sama_0980	0.18	+0.1
1,184,481	+		Sama_0980	0.18	-0.2
1,184,482	-		Sama_0980	0.18	+0.8
1,184,482	-		Sama_0980	0.18	+1.7
1,184,482	-		Sama_0980	0.18	+0.7
1,184,482	-		Sama_0980	0.18	-2.6
1,184,522	+		Sama_0980	0.19	+1.6
1,184,522	+		Sama_0980	0.19	-2.2
1,184,522	+		Sama_0980	0.19	-0.5
1,184,523	-		Sama_0980	0.19	+1.2
1,184,598	-		Sama_0980	0.23	-0.9
1,184,604	+		Sama_0980	0.23	-2.1
1,184,605	-		Sama_0980	0.23	+1.0
1,184,651	-		Sama_0980	0.25	-1.4
1,184,769	-		Sama_0980	0.30	+0.7
1,184,769	-		Sama_0980	0.30	+1.2
1,184,873	-		Sama_0980	0.34	+0.9
1,184,896	+		Sama_0980	0.35	+1.3
1,184,897	-		Sama_0980	0.35	+2.1
1,184,897	-		Sama_0980	0.35	+0.6
1,184,903	+		Sama_0980	0.35	-0.3
1,184,904	-		Sama_0980	0.35	+1.1
1,184,904	-		Sama_0980	0.35	-0.5
1,184,912	+		Sama_0980	0.36	-0.1
1,184,912	+		Sama_0980	0.36	-0.5
1,184,912	+		Sama_0980	0.36	-0.6
1,184,912	+		Sama_0980	0.36	+1.0
1,184,913	-		Sama_0980	0.36	+1.3
1,184,913	-		Sama_0980	0.36	+1.1
1,184,948	+		Sama_0980	0.37	+1.2
1,184,949	-		Sama_0980	0.37	-0.4
1,185,040	+		Sama_0980	0.41	+0.2
1,185,041	-		Sama_0980	0.41	+0.3
1,185,041	-		Sama_0980	0.41	-1.5
1,185,041	-		Sama_0980	0.41	-0.3
1,185,072	+		Sama_0980	0.43	+2.3
1,185,073	-		Sama_0980	0.43	+0.6
1,185,073	-		Sama_0980	0.43	+0.0
1,185,073	-		Sama_0980	0.43	-0.1
1,185,080	-		Sama_0980	0.43	-2.0
1,185,103	+		Sama_0980	0.44	+0.6
1,185,103	+		Sama_0980	0.44	-0.7
1,185,104	-		Sama_0980	0.44	-2.2
1,185,104	-		Sama_0980	0.44	-0.7
1,185,104	-		Sama_0980	0.44	+0.3
1,185,104	-		Sama_0980	0.44	+1.4
1,185,104	-		Sama_0980	0.44	+0.1
1,185,105	+		Sama_0980	0.44	+0.3
1,185,105	+		Sama_0980	0.44	-1.6
1,185,106	-		Sama_0980	0.44	+0.3
1,185,106	-		Sama_0980	0.44	-3.2
1,185,106	-		Sama_0980	0.44	-0.5
1,185,115	+		Sama_0980	0.44	-0.2
1,185,115	+		Sama_0980	0.44	-1.6
1,185,115	+		Sama_0980	0.44	-0.6
1,185,115	+		Sama_0980	0.44	+0.7
1,185,116	-		Sama_0980	0.44	+0.4
1,185,116	-		Sama_0980	0.44	+0.7
1,185,116	-		Sama_0980	0.44	+0.8
1,185,116	-		Sama_0980	0.44	+0.7
1,185,117	+		Sama_0980	0.44	-2.0
1,185,118	-		Sama_0980	0.44	+1.5
1,185,118	-		Sama_0980	0.44	+0.2
1,185,118	-		Sama_0980	0.44	-0.9
1,185,257	+		Sama_0980	0.50	+0.3
1,185,257	+		Sama_0980	0.50	+0.0
1,185,258	-		Sama_0980	0.50	+0.0
1,185,263	-		Sama_0980	0.51	+0.1
1,185,263	-		Sama_0980	0.51	+1.6
1,185,272	+		Sama_0980	0.51	+0.7
1,185,273	-		Sama_0980	0.51	+0.3
1,185,277	+		Sama_0980	0.51	+1.0
1,185,277	+		Sama_0980	0.51	+0.7
1,185,277	+		Sama_0980	0.51	-2.0
1,185,278	-		Sama_0980	0.51	-0.5
1,185,278	-		Sama_0980	0.51	-0.7
1,185,278	-		Sama_0980	0.51	-0.4
1,185,299	-		Sama_0980	0.52	+1.9
1,185,367	-		Sama_0980	0.55	-0.4
1,185,529	+		Sama_0980	0.62	+0.4
1,185,530	-		Sama_0980	0.62	+0.2
1,185,539	+		Sama_0980	0.62	-1.1
1,185,540	-		Sama_0980	0.62	-2.6
1,185,540	-		Sama_0980	0.62	-1.3
1,185,540	-		Sama_0980	0.62	+0.9
1,185,545	+		Sama_0980	0.62	-2.0
1,185,545	+		Sama_0980	0.62	-0.1
1,185,593	+		Sama_0980	0.64	+0.2
1,185,593	+		Sama_0980	0.64	+1.3
1,185,594	-		Sama_0980	0.64	+1.3
1,185,602	+		Sama_0980	0.65	-0.9
1,185,603	-		Sama_0980	0.65	+0.3
1,185,603	-		Sama_0980	0.65	-0.2
1,185,616	-		Sama_0980	0.65	+0.2
1,185,685	+		Sama_0980	0.68	+0.4
1,185,685	+		Sama_0980	0.68	-0.3
1,185,686	-		Sama_0980	0.68	+0.1
1,185,688	-		Sama_0980	0.68	+0.1
1,185,789	-		Sama_0980	0.73	-0.2
1,185,789	-		Sama_0980	0.73	-0.9
1,185,789	-		Sama_0980	0.73	+0.7
1,185,789	-		Sama_0980	0.73	+0.4
1,185,795	+		Sama_0980	0.73	-0.4
1,185,796	-		Sama_0980	0.73	-1.3
1,185,796	-		Sama_0980	0.73	+0.1
1,185,823	-		Sama_0980	0.74	+1.2
1,185,825	+		Sama_0980	0.74	-0.0
1,185,854	+		Sama_0980	0.75	-0.7
1,185,854	+		Sama_0980	0.75	+0.1
1,185,854	+		Sama_0980	0.75	+2.2
1,185,855	-		Sama_0980	0.75	-1.2
1,185,860	+		Sama_0980	0.76	-0.7
1,185,861	-		Sama_0980	0.76	-2.7
1,185,866	+		Sama_0980	0.76	-0.1
1,185,866	+		Sama_0980	0.76	-2.2
1,185,866	+		Sama_0980	0.76	+0.2
1,185,902	+		Sama_0980	0.77	-1.4
1,185,903	-		Sama_0980	0.77	+0.1
1,185,988	-		Sama_0980	0.81	-0.6
1,185,988	-		Sama_0980	0.81	-0.2
1,185,988	-		Sama_0980	0.81	-0.3
1,185,988	-		Sama_0980	0.81	-0.2
1,185,988	-		Sama_0980	0.81	-0.4
1,186,018	-		Sama_0980	0.82	-0.7
1,186,031	+		Sama_0980	0.83	-1.7
1,186,031	+		Sama_0980	0.83	+0.2
1,186,045	+		Sama_0980	0.83	-0.1
1,186,045	+		Sama_0980	0.83	+0.7
1,186,046	-		Sama_0980	0.83	-1.0
1,186,046	-		Sama_0980	0.83	-1.4
1,186,046	-		Sama_0980	0.83	+1.3
1,186,046	-		Sama_0980	0.83	-2.1
1,186,134	+		Sama_0980	0.87	-0.2
1,186,134	+		Sama_0980	0.87	-0.7
1,186,135	-		Sama_0980	0.87	+0.1
1,186,149	+		Sama_0980	0.88	+0.1
1,186,150	-		Sama_0980	0.88	+0.4
1,186,150	-		Sama_0980	0.88	+1.9
1,186,150	-		Sama_0980	0.88	+0.3
1,186,150	-		Sama_0980	0.88	+0.3
1,186,150	-		Sama_0980	0.88	-0.1
1,186,162	-		Sama_0980	0.88	+0.5
1,186,304	+				+0.1
1,186,304	+				+0.1
1,186,409	+				-1.2
1,186,409	+				-0.5
1,186,409	+				-1.9
1,186,409	+				-0.3
1,186,410	-				-1.6
1,186,410	-				+1.1
1,186,410	-				+0.5
1,186,410	-				-1.0
1,186,410	-				+0.7
1,186,410	-				-0.3
1,186,442	+				-1.4
1,186,442	+				-0.1
1,186,442	+				-2.0
1,186,443	-				-1.4
1,186,443	-				-1.0
1,186,443	-				-1.6
1,186,481	+				+0.8
1,186,482	-				-0.8
1,186,482	-				-1.3
1,186,486	+				-0.3
1,186,486	+				+1.5
1,186,486	+				+1.3
1,186,487	-				+0.8
1,186,487	-				-0.0
1,186,487	-				+0.9
1,186,511	+				+0.2
1,186,511	+				+1.5
1,186,511	+				-0.2
1,186,511	+				+0.2
1,186,511	+				-1.4
1,186,511	+				+0.7
1,186,511	+				-1.3
1,186,511	+				+0.4
1,186,512	-				+1.8
1,186,514	-				+0.1
1,186,564	+				-1.6
1,186,565	-				-0.5
1,186,568	+				-0.0
1,186,568	+				-1.4
1,186,569	-				+0.3
1,186,776	+		Sama_0981	0.17	-1.2
1,186,776	+		Sama_0981	0.17	+0.6
1,186,808	+		Sama_0981	0.19	+1.4
1,186,809	-		Sama_0981	0.19	+0.5
1,186,809	-		Sama_0981	0.19	+0.9
1,186,809	-		Sama_0981	0.19	+0.4
1,186,809	-		Sama_0981	0.19	-0.1
1,186,861	-		Sama_0981	0.23	+1.5
1,186,868	+		Sama_0981	0.24	-2.2
1,186,869	-		Sama_0981	0.24	-1.7
1,186,869	-		Sama_0981	0.24	-0.1
1,186,912	+		Sama_0981	0.27	-2.1
1,186,912	+		Sama_0981	0.27	-0.3
1,186,912	+		Sama_0981	0.27	+0.8
1,186,912	+		Sama_0981	0.27	-0.2
1,186,913	-		Sama_0981	0.27	-1.1
1,186,913	-		Sama_0981	0.27	+0.1
1,186,913	-		Sama_0981	0.27	+0.7
1,186,974	+		Sama_0981	0.32	-2.1
1,186,974	+		Sama_0981	0.32	-1.3
1,186,975	-		Sama_0981	0.32	-0.1
1,186,985	+		Sama_0981	0.32	+1.2
1,186,985	+		Sama_0981	0.32	+1.2
1,186,986	-		Sama_0981	0.32	+0.8
1,187,054	+		Sama_0981	0.37	+0.6
1,187,170	-		Sama_0981	0.46	-0.7
1,187,241	+		Sama_0981	0.51	-0.8
1,187,241	+		Sama_0981	0.51	-1.2
1,187,241	+		Sama_0981	0.51	-1.1
1,187,242	-		Sama_0981	0.51	-0.3
1,187,242	-		Sama_0981	0.51	+1.7
1,187,242	-		Sama_0981	0.51	+2.2