Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0657 and Sama_0658 are separated by 41 nucleotides Sama_0658 and Sama_0659 are separated by 422 nucleotides
Sama_0657: Sama_0657 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 813,803 to 814,861
_0657
Sama_0658: Sama_0658 - hypothetical protein (RefSeq), at 814,903 to 815,079
_0658
Sama_0659: Sama_0659 - ABC transporter, ATP-binding protein (RefSeq), at 815,502 to 817,286
_0659
Position (kb) 814
815
816 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 813.928 kb on + strand, within Sama_0657 at 813.928 kb on + strand, within Sama_0657 at 813.928 kb on + strand, within Sama_0657 at 813.929 kb on - strand, within Sama_0657 at 814.017 kb on - strand, within Sama_0657 at 814.017 kb on - strand, within Sama_0657 at 814.049 kb on + strand, within Sama_0657 at 814.049 kb on + strand, within Sama_0657 at 814.049 kb on + strand, within Sama_0657 at 814.049 kb on + strand, within Sama_0657 at 814.049 kb on + strand, within Sama_0657 at 814.049 kb on + strand, within Sama_0657 at 814.050 kb on - strand, within Sama_0657 at 814.050 kb on - strand, within Sama_0657 at 814.050 kb on - strand, within Sama_0657 at 814.050 kb on - strand, within Sama_0657 at 814.050 kb on - strand, within Sama_0657 at 814.050 kb on - strand, within Sama_0657 at 814.051 kb on + strand, within Sama_0657 at 814.051 kb on + strand, within Sama_0657 at 814.051 kb on + strand, within Sama_0657 at 814.051 kb on + strand, within Sama_0657 at 814.051 kb on + strand, within Sama_0657 at 814.051 kb on + strand, within Sama_0657 at 814.052 kb on - strand, within Sama_0657 at 814.125 kb on + strand, within Sama_0657 at 814.125 kb on + strand, within Sama_0657 at 814.125 kb on + strand, within Sama_0657 at 814.136 kb on + strand, within Sama_0657 at 814.137 kb on - strand, within Sama_0657 at 814.137 kb on - strand, within Sama_0657 at 814.153 kb on + strand, within Sama_0657 at 814.240 kb on + strand, within Sama_0657 at 814.240 kb on + strand, within Sama_0657 at 814.256 kb on + strand, within Sama_0657 at 814.257 kb on - strand, within Sama_0657 at 814.257 kb on - strand, within Sama_0657 at 814.257 kb on - strand, within Sama_0657 at 814.477 kb on + strand, within Sama_0657 at 814.478 kb on - strand, within Sama_0657 at 814.496 kb on - strand, within Sama_0657 at 814.496 kb on - strand, within Sama_0657 at 814.496 kb on - strand, within Sama_0657 at 814.523 kb on + strand, within Sama_0657 at 814.523 kb on + strand, within Sama_0657 at 814.523 kb on + strand, within Sama_0657 at 814.523 kb on + strand, within Sama_0657 at 814.524 kb on - strand, within Sama_0657 at 814.524 kb on - strand, within Sama_0657 at 814.524 kb on - strand, within Sama_0657 at 814.524 kb on - strand, within Sama_0657 at 814.678 kb on + strand, within Sama_0657 at 814.678 kb on + strand, within Sama_0657 at 814.678 kb on + strand, within Sama_0657 at 814.679 kb on - strand, within Sama_0657 at 814.679 kb on - strand, within Sama_0657 at 814.739 kb on - strand, within Sama_0657 at 814.760 kb on + strand at 814.855 kb on + strand at 814.855 kb on + strand at 814.856 kb on - strand at 814.856 kb on - strand at 814.856 kb on - strand at 814.856 kb on - strand at 814.862 kb on + strand at 814.894 kb on + strand at 814.894 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.898 kb on + strand at 814.899 kb on - strand at 814.899 kb on - strand at 814.899 kb on - strand at 814.899 kb on - strand at 814.899 kb on - strand at 814.900 kb on + strand at 814.901 kb on - strand at 814.905 kb on - strand at 814.905 kb on - strand at 814.928 kb on + strand, within Sama_0658 at 814.928 kb on + strand, within Sama_0658 at 814.928 kb on + strand, within Sama_0658 at 814.928 kb on + strand, within Sama_0658 at 814.929 kb on - strand, within Sama_0658 at 814.962 kb on + strand, within Sama_0658 at 814.962 kb on + strand, within Sama_0658 at 815.080 kb on - strand at 815.090 kb on + strand at 815.096 kb on - strand at 815.163 kb on + strand at 815.164 kb on - strand at 815.179 kb on + strand at 815.180 kb on - strand at 815.180 kb on - strand at 815.199 kb on + strand at 815.199 kb on + strand at 815.200 kb on - strand at 815.200 kb on - strand at 815.202 kb on - strand at 815.249 kb on - strand at 815.306 kb on - strand at 815.319 kb on - strand at 815.321 kb on + strand at 815.374 kb on + strand at 815.374 kb on + strand at 815.375 kb on - strand at 815.418 kb on + strand at 815.418 kb on + strand at 815.419 kb on - strand at 815.466 kb on + strand at 815.466 kb on + strand at 815.466 kb on + strand at 815.466 kb on + strand at 815.466 kb on + strand at 815.467 kb on - strand at 815.467 kb on - strand at 815.467 kb on - strand at 815.467 kb on - strand at 815.467 kb on - strand at 815.495 kb on + strand at 815.495 kb on + strand at 815.495 kb on + strand at 815.495 kb on + strand at 815.495 kb on + strand at 815.495 kb on + strand at 815.495 kb on + strand at 815.495 kb on + strand at 815.496 kb on - strand at 815.496 kb on - strand at 815.496 kb on - strand at 815.496 kb on - strand at 815.496 kb on - strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.501 kb on + strand at 815.502 kb on - strand at 815.502 kb on - strand at 815.502 kb on - strand at 815.502 kb on - strand at 815.502 kb on - strand at 815.502 kb on - strand at 815.502 kb on - strand at 815.517 kb on + strand at 815.554 kb on + strand at 815.554 kb on + strand at 815.555 kb on - strand at 815.555 kb on - strand at 815.566 kb on + strand at 815.567 kb on - strand at 815.567 kb on - strand at 815.575 kb on - strand at 815.578 kb on + strand at 815.578 kb on + strand at 815.579 kb on - strand at 815.597 kb on + strand at 815.597 kb on + strand at 815.597 kb on + strand at 815.597 kb on + strand at 815.597 kb on + strand at 815.598 kb on - strand at 815.644 kb on + strand at 815.644 kb on + strand at 815.644 kb on + strand at 815.644 kb on + strand at 815.644 kb on + strand at 815.645 kb on - strand at 815.645 kb on - strand at 815.645 kb on - strand at 815.717 kb on - strand, within Sama_0659 at 815.739 kb on + strand, within Sama_0659 at 815.740 kb on - strand, within Sama_0659 at 815.911 kb on + strand, within Sama_0659 at 815.911 kb on + strand, within Sama_0659 at 815.911 kb on + strand, within Sama_0659 at 815.912 kb on - strand, within Sama_0659 at 815.912 kb on - strand, within Sama_0659 at 815.912 kb on - strand, within Sama_0659 at 815.912 kb on - strand, within Sama_0659 at 815.912 kb on - strand, within Sama_0659 at 815.912 kb on - strand, within Sama_0659 at 815.952 kb on - strand, within Sama_0659 at 815.952 kb on - strand, within Sama_0659 at 815.965 kb on + strand, within Sama_0659 at 815.965 kb on + strand, within Sama_0659 at 815.966 kb on - strand, within Sama_0659 at 815.966 kb on - strand, within Sama_0659 at 816.018 kb on + strand, within Sama_0659 at 816.018 kb on + strand, within Sama_0659 at 816.018 kb on + strand, within Sama_0659 at 816.038 kb on + strand, within Sama_0659 at 816.063 kb on + strand, within Sama_0659 at 816.063 kb on + strand, within Sama_0659 at 816.063 kb on + strand, within Sama_0659 at 816.063 kb on + strand, within Sama_0659 at 816.064 kb on - strand, within Sama_0659 at 816.064 kb on - strand, within Sama_0659 at 816.064 kb on - strand, within Sama_0659 at 816.064 kb on - strand, within Sama_0659 at 816.064 kb on - strand, within Sama_0659 at 816.064 kb on - strand, within Sama_0659 at 816.065 kb on + strand, within Sama_0659 at 816.066 kb on - strand, within Sama_0659
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 813,928 + Sama_0657 0.12 -0.9 813,928 + Sama_0657 0.12 +0.5 813,928 + Sama_0657 0.12 +0.0 813,929 - Sama_0657 0.12 +0.8 814,017 - Sama_0657 0.20 -1.3 814,017 - Sama_0657 0.20 +0.5 814,049 + Sama_0657 0.23 -0.4 814,049 + Sama_0657 0.23 +0.9 814,049 + Sama_0657 0.23 +0.0 814,049 + Sama_0657 0.23 -2.4 814,049 + Sama_0657 0.23 -0.0 814,049 + Sama_0657 0.23 +0.6 814,050 - Sama_0657 0.23 -0.1 814,050 - Sama_0657 0.23 -2.3 814,050 - Sama_0657 0.23 -0.6 814,050 - Sama_0657 0.23 -1.2 814,050 - Sama_0657 0.23 +3.2 814,050 - Sama_0657 0.23 -0.5 814,051 + Sama_0657 0.23 -1.8 814,051 + Sama_0657 0.23 +1.2 814,051 + Sama_0657 0.23 +2.6 814,051 + Sama_0657 0.23 +0.2 814,051 + Sama_0657 0.23 -1.7 814,051 + Sama_0657 0.23 +1.7 814,052 - Sama_0657 0.24 +1.6 814,125 + Sama_0657 0.30 -0.8 814,125 + Sama_0657 0.30 +2.3 814,125 + Sama_0657 0.30 +1.3 814,136 + Sama_0657 0.31 -0.9 814,137 - Sama_0657 0.32 -0.2 814,137 - Sama_0657 0.32 -0.8 814,153 + Sama_0657 0.33 -1.5 814,240 + Sama_0657 0.41 -2.8 814,240 + Sama_0657 0.41 -0.8 814,256 + Sama_0657 0.43 -1.7 814,257 - Sama_0657 0.43 +0.6 814,257 - Sama_0657 0.43 +0.2 814,257 - Sama_0657 0.43 +1.0 814,477 + Sama_0657 0.64 +0.4 814,478 - Sama_0657 0.64 -1.8 814,496 - Sama_0657 0.65 -2.4 814,496 - Sama_0657 0.65 +1.5 814,496 - Sama_0657 0.65 -0.5 814,523 + Sama_0657 0.68 +0.7 814,523 + Sama_0657 0.68 +0.3 814,523 + Sama_0657 0.68 +0.9 814,523 + Sama_0657 0.68 +0.2 814,524 - Sama_0657 0.68 +0.0 814,524 - Sama_0657 0.68 +2.5 814,524 - Sama_0657 0.68 -0.2 814,524 - Sama_0657 0.68 +1.1 814,678 + Sama_0657 0.83 +1.1 814,678 + Sama_0657 0.83 +0.7 814,678 + Sama_0657 0.83 -0.9 814,679 - Sama_0657 0.83 +0.2 814,679 - Sama_0657 0.83 +0.2 814,739 - Sama_0657 0.88 -0.5 814,760 + +0.6 814,855 + -0.3 814,855 + -0.7 814,856 - +0.6 814,856 - -1.9 814,856 - -0.7 814,856 - +0.7 814,862 + +1.2 814,894 + +1.3 814,894 + +0.7 814,898 + -0.1 814,898 + -0.7 814,898 + +0.5 814,898 + -0.6 814,898 + +1.1 814,898 + -0.7 814,898 + -2.5 814,898 + +1.0 814,898 + +0.2 814,899 - -1.9 814,899 - -2.8 814,899 - +1.0 814,899 - -0.3 814,899 - -0.1 814,900 + -2.3 814,901 - -0.6 814,905 - -0.6 814,905 - -0.2 814,928 + Sama_0658 0.14 +1.7 814,928 + Sama_0658 0.14 +1.5 814,928 + Sama_0658 0.14 -2.1 814,928 + Sama_0658 0.14 +2.5 814,929 - Sama_0658 0.15 +0.3 814,962 + Sama_0658 0.33 -1.6 814,962 + Sama_0658 0.33 -0.7 815,080 - -2.7 815,090 + -0.4 815,096 - +0.0 815,163 + -0.5 815,164 - +1.2 815,179 + +1.9 815,180 - -0.8 815,180 - -0.1 815,199 + +1.3 815,199 + -0.6 815,200 - +1.9 815,200 - +0.4 815,202 - +1.5 815,249 - -2.4 815,306 - +0.3 815,319 - -1.6 815,321 + +0.2 815,374 + +1.7 815,374 + +0.9 815,375 - +0.2 815,418 + -0.9 815,418 + +1.5 815,419 - -0.8 815,466 + +0.3 815,466 + -3.5 815,466 + +0.1 815,466 + +0.9 815,466 + +0.3 815,467 - +0.6 815,467 - +0.1 815,467 - +0.6 815,467 - -0.8 815,467 - +0.2 815,495 + +0.3 815,495 + -1.3 815,495 + +1.5 815,495 + -1.5 815,495 + -2.5 815,495 + +0.9 815,495 + -1.7 815,495 + -1.0 815,496 - -0.7 815,496 - -0.2 815,496 - -0.7 815,496 - +1.0 815,496 - -0.5 815,497 + +0.7 815,497 + -0.3 815,497 + -0.1 815,497 + -1.1 815,497 + +1.1 815,497 + +0.2 815,497 + +1.1 815,497 + +0.2 815,497 + +1.0 815,497 + -0.3 815,497 + -2.0 815,497 + -1.4 815,498 - +0.4 815,498 - -1.1 815,498 - -0.1 815,498 - +1.2 815,498 - -2.2 815,498 - -0.5 815,498 - +3.5 815,498 - -0.2 815,498 - -1.5 815,498 - -1.1 815,498 - +2.1 815,498 - +0.2 815,498 - -1.2 815,498 - -2.1 815,498 - +0.3 815,501 + -3.9 815,501 + -0.1 815,501 + -0.5 815,501 + -1.8 815,501 + -0.9 815,501 + +0.6 815,501 + +0.5 815,501 + +0.5 815,501 + +1.0 815,501 + +0.5 815,501 + +2.4 815,502 - -1.5 815,502 - +0.4 815,502 - -1.6 815,502 - -0.6 815,502 - +0.5 815,502 - -0.8 815,502 - -0.9 815,517 + +1.5 815,554 + -1.8 815,554 + -0.6 815,555 - +1.4 815,555 - -1.0 815,566 + -1.7 815,567 - -0.9 815,567 - -0.7 815,575 - +0.5 815,578 + -0.3 815,578 + -0.4 815,579 - +0.4 815,597 + -1.4 815,597 + -1.4 815,597 + -0.0 815,597 + -0.4 815,597 + -1.3 815,598 - -0.0 815,644 + -0.0 815,644 + +0.6 815,644 + -0.5 815,644 + -2.1 815,644 + -2.0 815,645 - +0.0 815,645 - -0.8 815,645 - -1.2 815,717 - Sama_0659 0.12 -1.3 815,739 + Sama_0659 0.13 +0.3 815,740 - Sama_0659 0.13 +2.0 815,911 + Sama_0659 0.23 -1.1 815,911 + Sama_0659 0.23 +0.9 815,911 + Sama_0659 0.23 +0.6 815,912 - Sama_0659 0.23 +0.6 815,912 - Sama_0659 0.23 -1.2 815,912 - Sama_0659 0.23 -0.8 815,912 - Sama_0659 0.23 -1.4 815,912 - Sama_0659 0.23 -0.1 815,912 - Sama_0659 0.23 -0.2 815,952 - Sama_0659 0.25 +1.4 815,952 - Sama_0659 0.25 -1.2 815,965 + Sama_0659 0.26 +1.0 815,965 + Sama_0659 0.26 -0.9 815,966 - Sama_0659 0.26 -2.2 815,966 - Sama_0659 0.26 +0.7 816,018 + Sama_0659 0.29 -0.5 816,018 + Sama_0659 0.29 -0.4 816,018 + Sama_0659 0.29 -0.2 816,038 + Sama_0659 0.30 +0.6 816,063 + Sama_0659 0.31 -2.6 816,063 + Sama_0659 0.31 -1.0 816,063 + Sama_0659 0.31 -0.7 816,063 + Sama_0659 0.31 +0.1 816,064 - Sama_0659 0.31 -0.0 816,064 - Sama_0659 0.31 -1.1 816,064 - Sama_0659 0.31 +0.1 816,064 - Sama_0659 0.31 -1.5 816,064 - Sama_0659 0.31 -2.7 816,064 - Sama_0659 0.31 -1.8 816,065 + Sama_0659 0.32 +0.2 816,066 - Sama_0659 0.32 -0.4
Or see this region's nucleotide sequence