Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0613 and Sama_0614 are separated by 71 nucleotides Sama_0614 and Sama_0615 are separated by 94 nucleotides Sama_0615 and Sama_0616 are separated by 120 nucleotides
Sama_0613: Sama_0613 - dienelactone hydrolase (RefSeq), at 766,446 to 767,180
_0613
Sama_0614: Sama_0614 - hypothetical protein (RefSeq), at 767,252 to 767,887
_0614
Sama_0615: Sama_0615 - putative spermidine synthase (RefSeq), at 767,982 to 768,728
_0615
Sama_0616: Sama_0616 - leucyl aminopeptidase (RefSeq), at 768,849 to 770,375
_0616
Position (kb) 767
768
769 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 767.093 kb on + strand, within Sama_0613 at 767.094 kb on - strand, within Sama_0613 at 767.138 kb on - strand at 767.138 kb on - strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.156 kb on - strand at 767.182 kb on - strand at 767.182 kb on - strand at 767.227 kb on + strand at 767.228 kb on - strand at 767.305 kb on + strand at 767.305 kb on + strand at 767.305 kb on + strand at 767.360 kb on - strand, within Sama_0614 at 767.394 kb on + strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.411 kb on + strand, within Sama_0614 at 767.412 kb on - strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.451 kb on + strand, within Sama_0614 at 767.482 kb on + strand, within Sama_0614 at 767.482 kb on + strand, within Sama_0614 at 767.483 kb on - strand, within Sama_0614 at 767.525 kb on - strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.592 kb on - strand, within Sama_0614 at 767.608 kb on + strand, within Sama_0614 at 767.688 kb on + strand, within Sama_0614 at 767.728 kb on + strand, within Sama_0614 at 767.728 kb on + strand, within Sama_0614 at 767.729 kb on - strand, within Sama_0614 at 767.738 kb on + strand, within Sama_0614 at 767.738 kb on + strand, within Sama_0614 at 767.812 kb on + strand, within Sama_0614 at 767.836 kb on + strand at 767.837 kb on - strand at 767.837 kb on - strand at 767.837 kb on - strand at 767.841 kb on + strand at 767.842 kb on - strand at 767.842 kb on - strand at 767.842 kb on - strand at 767.856 kb on + strand at 767.857 kb on - strand at 767.873 kb on + strand at 767.874 kb on - strand at 767.887 kb on + strand at 767.890 kb on + strand at 767.891 kb on - strand at 767.891 kb on - strand at 767.891 kb on - strand at 767.923 kb on - strand at 767.927 kb on + strand at 767.928 kb on - strand at 767.928 kb on - strand at 767.999 kb on + strand at 768.000 kb on - strand at 768.003 kb on + strand at 768.004 kb on - strand at 768.020 kb on + strand at 768.020 kb on + strand at 768.020 kb on + strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.133 kb on - strand, within Sama_0615 at 768.133 kb on - strand, within Sama_0615 at 768.187 kb on + strand, within Sama_0615 at 768.188 kb on - strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.215 kb on - strand, within Sama_0615 at 768.215 kb on - strand, within Sama_0615 at 768.245 kb on + strand, within Sama_0615 at 768.245 kb on + strand, within Sama_0615 at 768.245 kb on + strand, within Sama_0615 at 768.246 kb on - strand, within Sama_0615 at 768.259 kb on + strand, within Sama_0615 at 768.313 kb on + strand, within Sama_0615 at 768.317 kb on + strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.390 kb on - strand, within Sama_0615 at 768.449 kb on + strand, within Sama_0615 at 768.450 kb on - strand, within Sama_0615 at 768.450 kb on - strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.568 kb on - strand, within Sama_0615 at 768.601 kb on + strand, within Sama_0615 at 768.601 kb on + strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.613 kb on + strand, within Sama_0615 at 768.629 kb on + strand, within Sama_0615 at 768.758 kb on + strand at 768.758 kb on + strand at 768.758 kb on + strand at 768.759 kb on - strand at 768.779 kb on + strand at 768.779 kb on + strand at 768.780 kb on - strand at 768.790 kb on + strand at 768.801 kb on + strand at 768.801 kb on + strand at 768.801 kb on + strand at 768.812 kb on + strand at 768.813 kb on - strand at 768.829 kb on + strand at 768.830 kb on - strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.833 kb on - strand at 768.833 kb on - strand at 768.863 kb on + strand at 768.864 kb on - strand at 768.864 kb on - strand at 768.895 kb on + strand at 768.896 kb on - strand at 768.896 kb on - strand at 768.920 kb on + strand at 768.974 kb on + strand at 768.974 kb on + strand at 768.974 kb on + strand at 768.975 kb on - strand at 768.975 kb on - strand at 768.975 kb on - strand at 768.975 kb on - strand at 768.986 kb on + strand at 768.987 kb on - strand at 769.054 kb on + strand, within Sama_0616 at 769.054 kb on + strand, within Sama_0616 at 769.055 kb on - strand, within Sama_0616 at 769.110 kb on - strand, within Sama_0616 at 769.176 kb on - strand, within Sama_0616 at 769.176 kb on - strand, within Sama_0616 at 769.230 kb on - strand, within Sama_0616 at 769.230 kb on - strand, within Sama_0616 at 769.320 kb on + strand, within Sama_0616 at 769.321 kb on - strand, within Sama_0616 at 769.321 kb on - strand, within Sama_0616 at 769.322 kb on + strand, within Sama_0616 at 769.323 kb on - strand, within Sama_0616 at 769.323 kb on - strand, within Sama_0616 at 769.328 kb on + strand, within Sama_0616 at 769.328 kb on + strand, within Sama_0616 at 769.328 kb on + strand, within Sama_0616 at 769.328 kb on + strand, within Sama_0616 at 769.328 kb on + strand, within Sama_0616 at 769.328 kb on + strand, within Sama_0616 at 769.329 kb on - strand, within Sama_0616 at 769.329 kb on - strand, within Sama_0616 at 769.392 kb on + strand, within Sama_0616 at 769.392 kb on + strand, within Sama_0616 at 769.393 kb on - strand, within Sama_0616 at 769.393 kb on - strand, within Sama_0616 at 769.393 kb on - strand, within Sama_0616 at 769.463 kb on + strand, within Sama_0616 at 769.464 kb on - strand, within Sama_0616 at 769.496 kb on + strand, within Sama_0616 at 769.496 kb on + strand, within Sama_0616 at 769.670 kb on + strand, within Sama_0616 at 769.670 kb on + strand, within Sama_0616 at 769.670 kb on + strand, within Sama_0616 at 769.670 kb on + strand, within Sama_0616 at 769.670 kb on + strand, within Sama_0616 at 769.671 kb on - strand, within Sama_0616 at 769.689 kb on + strand, within Sama_0616
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 767,093 + Sama_0613 0.88 -0.6 767,094 - Sama_0613 0.88 -1.4 767,138 - -0.9 767,138 - -0.3 767,142 + +1.1 767,142 + -1.2 767,142 + -0.1 767,142 + +0.6 767,143 - +0.6 767,143 - +0.9 767,143 - -1.3 767,143 - +0.2 767,156 - +0.2 767,182 - -0.9 767,182 - +0.7 767,227 + +1.2 767,228 - +1.2 767,305 + +0.7 767,305 + -0.9 767,305 + +0.9 767,360 - Sama_0614 0.17 +0.0 767,394 + Sama_0614 0.22 +0.5 767,395 - Sama_0614 0.22 -1.3 767,395 - Sama_0614 0.22 -0.8 767,395 - Sama_0614 0.22 +2.0 767,395 - Sama_0614 0.22 -0.4 767,395 - Sama_0614 0.22 -1.2 767,411 + Sama_0614 0.25 +0.3 767,412 - Sama_0614 0.25 -0.2 767,416 + Sama_0614 0.26 +1.3 767,416 + Sama_0614 0.26 -0.4 767,416 + Sama_0614 0.26 +1.6 767,416 + Sama_0614 0.26 -0.0 767,416 + Sama_0614 0.26 +1.2 767,451 + Sama_0614 0.31 +0.1 767,482 + Sama_0614 0.36 -2.8 767,482 + Sama_0614 0.36 -0.4 767,483 - Sama_0614 0.36 +1.1 767,525 - Sama_0614 0.43 +0.3 767,591 + Sama_0614 0.53 +1.2 767,591 + Sama_0614 0.53 +0.2 767,591 + Sama_0614 0.53 +0.5 767,591 + Sama_0614 0.53 +0.1 767,591 + Sama_0614 0.53 -0.6 767,592 - Sama_0614 0.53 -3.1 767,608 + Sama_0614 0.56 +2.6 767,688 + Sama_0614 0.69 -1.4 767,728 + Sama_0614 0.75 -1.0 767,728 + Sama_0614 0.75 -3.8 767,729 - Sama_0614 0.75 -0.3 767,738 + Sama_0614 0.76 -1.0 767,738 + Sama_0614 0.76 +0.3 767,812 + Sama_0614 0.88 +0.8 767,836 + -0.5 767,837 - -1.9 767,837 - +0.9 767,837 - +0.6 767,841 + -0.4 767,842 - -1.3 767,842 - -0.0 767,842 - -2.4 767,856 + +0.8 767,857 - +1.1 767,873 + +0.7 767,874 - +0.4 767,887 + -0.9 767,890 + -1.9 767,891 - +0.6 767,891 - -0.6 767,891 - +0.2 767,923 - +1.3 767,927 + -0.3 767,928 - +1.0 767,928 - +1.0 767,999 + -0.7 768,000 - +0.7 768,003 + +0.5 768,004 - -0.7 768,020 + -0.4 768,020 + +0.6 768,020 + -0.5 768,021 - -1.1 768,021 - -0.2 768,021 - +0.8 768,021 - -0.5 768,132 + Sama_0615 0.20 +1.4 768,132 + Sama_0615 0.20 +1.2 768,132 + Sama_0615 0.20 -0.4 768,132 + Sama_0615 0.20 -1.4 768,133 - Sama_0615 0.20 +2.0 768,133 - Sama_0615 0.20 +0.3 768,187 + Sama_0615 0.27 -1.7 768,188 - Sama_0615 0.28 +0.4 768,214 + Sama_0615 0.31 -1.0 768,214 + Sama_0615 0.31 +0.4 768,214 + Sama_0615 0.31 -0.4 768,214 + Sama_0615 0.31 -1.1 768,215 - Sama_0615 0.31 -0.4 768,215 - Sama_0615 0.31 +0.2 768,245 + Sama_0615 0.35 -0.2 768,245 + Sama_0615 0.35 +0.0 768,245 + Sama_0615 0.35 +0.4 768,246 - Sama_0615 0.35 +0.1 768,259 + Sama_0615 0.37 +0.2 768,313 + Sama_0615 0.44 +1.2 768,317 + Sama_0615 0.45 +0.4 768,318 - Sama_0615 0.45 +0.2 768,318 - Sama_0615 0.45 +1.6 768,318 - Sama_0615 0.45 +0.0 768,318 - Sama_0615 0.45 +0.4 768,318 - Sama_0615 0.45 +0.6 768,318 - Sama_0615 0.45 -1.1 768,390 - Sama_0615 0.55 -0.1 768,449 + Sama_0615 0.63 +0.7 768,450 - Sama_0615 0.63 -1.9 768,450 - Sama_0615 0.63 -0.1 768,485 + Sama_0615 0.67 +0.4 768,485 + Sama_0615 0.67 -0.9 768,485 + Sama_0615 0.67 -0.2 768,485 + Sama_0615 0.67 +1.9 768,485 + Sama_0615 0.67 -2.9 768,485 + Sama_0615 0.67 +0.7 768,485 + Sama_0615 0.67 -1.2 768,486 - Sama_0615 0.67 -1.4 768,486 - Sama_0615 0.67 +1.4 768,486 - Sama_0615 0.67 +0.6 768,486 - Sama_0615 0.67 -0.5 768,486 - Sama_0615 0.67 +0.0 768,486 - Sama_0615 0.67 -0.0 768,486 - Sama_0615 0.67 +0.8 768,486 - Sama_0615 0.67 +1.1 768,567 + Sama_0615 0.78 -2.7 768,567 + Sama_0615 0.78 -0.0 768,567 + Sama_0615 0.78 -2.0 768,567 + Sama_0615 0.78 +0.9 768,567 + Sama_0615 0.78 -1.1 768,567 + Sama_0615 0.78 -2.8 768,568 - Sama_0615 0.78 -0.6 768,601 + Sama_0615 0.83 +1.0 768,601 + Sama_0615 0.83 +0.1 768,602 - Sama_0615 0.83 +0.2 768,602 - Sama_0615 0.83 -1.3 768,602 - Sama_0615 0.83 -0.8 768,602 - Sama_0615 0.83 -2.4 768,613 + Sama_0615 0.84 -0.3 768,629 + Sama_0615 0.87 -0.5 768,758 + +0.0 768,758 + -1.3 768,758 + -1.9 768,759 - -1.9 768,779 + +2.2 768,779 + -0.0 768,780 - +1.1 768,790 + +1.7 768,801 + -0.4 768,801 + -2.6 768,801 + -0.4 768,812 + +1.3 768,813 - +2.1 768,829 + +0.2 768,830 - +0.5 768,832 + -0.3 768,832 + -0.1 768,832 + -0.5 768,832 + -1.9 768,832 + -0.6 768,833 - +0.9 768,833 - -0.1 768,863 + +0.7 768,864 - -0.7 768,864 - -0.6 768,895 + -0.4 768,896 - +1.6 768,896 - -0.3 768,920 + -0.4 768,974 + +1.3 768,974 + -0.6 768,974 + +1.6 768,975 - -2.0 768,975 - +1.3 768,975 - +0.1 768,975 - -2.3 768,986 + -1.4 768,987 - +0.1 769,054 + Sama_0616 0.13 -0.4 769,054 + Sama_0616 0.13 +1.9 769,055 - Sama_0616 0.13 +1.4 769,110 - Sama_0616 0.17 -2.5 769,176 - Sama_0616 0.21 -0.2 769,176 - Sama_0616 0.21 -0.5 769,230 - Sama_0616 0.25 -2.0 769,230 - Sama_0616 0.25 +0.4 769,320 + Sama_0616 0.31 +0.9 769,321 - Sama_0616 0.31 +1.1 769,321 - Sama_0616 0.31 -1.2 769,322 + Sama_0616 0.31 -1.1 769,323 - Sama_0616 0.31 +0.7 769,323 - Sama_0616 0.31 +2.1 769,328 + Sama_0616 0.31 +0.1 769,328 + Sama_0616 0.31 +1.0 769,328 + Sama_0616 0.31 +0.7 769,328 + Sama_0616 0.31 -0.5 769,328 + Sama_0616 0.31 +0.4 769,328 + Sama_0616 0.31 +0.6 769,329 - Sama_0616 0.31 +1.0 769,329 - Sama_0616 0.31 +0.1 769,392 + Sama_0616 0.36 -1.0 769,392 + Sama_0616 0.36 -0.1 769,393 - Sama_0616 0.36 +1.4 769,393 - Sama_0616 0.36 +0.4 769,393 - Sama_0616 0.36 +0.8 769,463 + Sama_0616 0.40 -0.2 769,464 - Sama_0616 0.40 -1.4 769,496 + Sama_0616 0.42 +0.1 769,496 + Sama_0616 0.42 -1.5 769,670 + Sama_0616 0.54 -0.5 769,670 + Sama_0616 0.54 -1.6 769,670 + Sama_0616 0.54 +0.9 769,670 + Sama_0616 0.54 +0.3 769,670 + Sama_0616 0.54 +0.4 769,671 - Sama_0616 0.54 +1.1 769,689 + Sama_0616 0.55 -0.2
Or see this region's nucleotide sequence