Strain Fitness in Shewanella amazonensis SB2B around Sama_0375
Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Putrescine (N) |
---|---|---|---|---|---|
remove | |||||
452,828 | - | +0.9 | |||
452,828 | - | -0.2 | |||
452,835 | + | -0.2 | |||
452,845 | + | +1.1 | |||
452,845 | + | +0.8 | |||
452,846 | - | -2.1 | |||
452,879 | + | -0.7 | |||
452,879 | + | +0.6 | |||
452,879 | + | +0.9 | |||
452,879 | + | -1.5 | |||
452,879 | + | -0.6 | |||
452,879 | + | -0.7 | |||
452,879 | + | +1.4 | |||
452,879 | + | +1.8 | |||
452,879 | + | -1.1 | |||
452,880 | - | +0.2 | |||
452,880 | - | -0.3 | |||
452,880 | - | +1.3 | |||
452,880 | - | +0.3 | |||
452,880 | - | -1.7 | |||
452,902 | - | +0.1 | |||
452,913 | + | -1.3 | |||
452,913 | + | -1.8 | |||
452,913 | + | -1.0 | |||
452,914 | - | -2.1 | |||
452,914 | - | +0.1 | |||
452,914 | - | -1.0 | |||
452,923 | - | -1.3 | |||
453,004 | + | -2.1 | |||
453,004 | + | -1.3 | |||
453,004 | + | -2.0 | |||
453,005 | - | -0.8 | |||
453,006 | + | -2.4 | |||
453,006 | + | +0.3 | |||
453,006 | + | -2.1 | |||
453,006 | + | -1.1 | |||
453,006 | + | -0.8 | |||
453,007 | - | -2.1 | |||
453,210 | + | pdhR | Sama_0374 | 0.28 | -1.0 |
453,210 | + | pdhR | Sama_0374 | 0.28 | -1.0 |
453,210 | + | pdhR | Sama_0374 | 0.28 | -2.7 |
453,210 | + | pdhR | Sama_0374 | 0.28 | -2.5 |
453,210 | + | pdhR | Sama_0374 | 0.28 | -2.4 |
453,210 | + | pdhR | Sama_0374 | 0.28 | -1.0 |
453,214 | + | pdhR | Sama_0374 | 0.29 | -1.4 |
453,214 | + | pdhR | Sama_0374 | 0.29 | -1.1 |
453,214 | + | pdhR | Sama_0374 | 0.29 | -1.3 |
453,214 | + | pdhR | Sama_0374 | 0.29 | +0.9 |
453,215 | - | pdhR | Sama_0374 | 0.29 | -1.7 |
453,215 | - | pdhR | Sama_0374 | 0.29 | -1.4 |
453,252 | + | pdhR | Sama_0374 | 0.34 | -1.5 |
453,257 | + | pdhR | Sama_0374 | 0.34 | -1.0 |
453,257 | + | pdhR | Sama_0374 | 0.34 | -2.1 |
453,290 | - | pdhR | Sama_0374 | 0.39 | -0.3 |
453,354 | + | pdhR | Sama_0374 | 0.47 | -1.8 |
453,372 | + | pdhR | Sama_0374 | 0.50 | -1.8 |
453,372 | + | pdhR | Sama_0374 | 0.50 | -2.1 |
453,372 | + | pdhR | Sama_0374 | 0.50 | -0.6 |
453,372 | + | pdhR | Sama_0374 | 0.50 | -3.6 |
453,372 | + | pdhR | Sama_0374 | 0.50 | -3.1 |
453,414 | + | pdhR | Sama_0374 | 0.55 | -1.1 |
453,414 | + | pdhR | Sama_0374 | 0.55 | -3.0 |
453,414 | + | pdhR | Sama_0374 | 0.55 | -2.2 |
453,448 | + | pdhR | Sama_0374 | 0.60 | -0.4 |
453,488 | + | pdhR | Sama_0374 | 0.65 | -3.9 |
453,488 | + | pdhR | Sama_0374 | 0.65 | -3.5 |
453,488 | + | pdhR | Sama_0374 | 0.65 | -2.4 |
453,488 | + | pdhR | Sama_0374 | 0.65 | -2.8 |
453,488 | + | pdhR | Sama_0374 | 0.65 | -1.2 |
453,488 | + | pdhR | Sama_0374 | 0.65 | -2.6 |
453,488 | + | pdhR | Sama_0374 | 0.65 | -1.1 |
453,500 | + | pdhR | Sama_0374 | 0.67 | -0.7 |
453,506 | + | pdhR | Sama_0374 | 0.67 | -0.4 |
453,614 | + | pdhR | Sama_0374 | 0.82 | +0.2 |
453,614 | + | pdhR | Sama_0374 | 0.82 | -0.7 |
453,614 | + | pdhR | Sama_0374 | 0.82 | +0.8 |
453,614 | + | pdhR | Sama_0374 | 0.82 | -1.0 |
453,614 | + | pdhR | Sama_0374 | 0.82 | -1.1 |
453,667 | + | pdhR | Sama_0374 | 0.89 | -2.5 |
453,667 | + | pdhR | Sama_0374 | 0.89 | -0.6 |
453,734 | + | -2.9 | |||
453,767 | + | -0.1 | |||
453,767 | + | -1.0 | |||
453,767 | + | +0.3 | |||
453,773 | + | -1.8 | |||
453,773 | + | +0.2 | |||
453,796 | + | -0.4 | |||
453,800 | + | -1.3 | |||
453,800 | + | -2.3 | |||
453,800 | + | +1.0 | |||
453,800 | + | -0.9 | |||
453,800 | + | -1.8 | |||
453,800 | + | -3.0 | |||
453,800 | + | -0.6 | |||
453,800 | + | +0.5 | |||
453,800 | + | -0.3 | |||
453,800 | + | +0.4 | |||
453,800 | + | +0.2 | |||
453,800 | + | -0.8 | |||
453,800 | + | -2.0 | |||
453,800 | + | -1.6 | |||
453,800 | + | -1.7 | |||
453,800 | + | -0.5 | |||
453,800 | + | -1.9 | |||
453,800 | + | -1.8 | |||
453,800 | + | -0.8 | |||
453,800 | + | -0.3 | |||
453,800 | + | -0.5 | |||
453,801 | - | -1.3 | |||
453,801 | - | -1.4 | |||
453,801 | - | -1.3 | |||
453,801 | - | +0.2 | |||
453,801 | - | -1.4 | |||
453,801 | - | -2.9 | |||
453,801 | - | -1.8 | |||
453,804 | + | +0.7 | |||
453,804 | + | -1.4 | |||
453,804 | + | +0.1 | |||
453,804 | + | +0.7 | |||
453,804 | + | -2.1 | |||
453,804 | + | +1.7 | |||
453,804 | + | +1.0 | |||
453,804 | + | -0.8 | |||
453,804 | + | -0.1 | |||
453,804 | + | -0.3 | |||
453,804 | + | +0.3 | |||
453,804 | + | +1.1 | |||
453,805 | - | -0.3 | |||
453,805 | - | -0.8 | |||
453,805 | - | -1.4 | |||
453,805 | - | -1.4 | |||
453,805 | - | -2.0 | |||
453,806 | + | -1.4 | |||
453,806 | + | -0.7 | |||
453,806 | + | +2.5 | |||
453,806 | + | +0.7 | |||
453,806 | + | -1.1 | |||
453,806 | + | -1.6 | |||
453,806 | + | +1.2 | |||
453,806 | + | -0.4 | |||
453,806 | + | -1.6 | |||
453,807 | - | -0.4 | |||
453,807 | - | -1.8 | |||
453,808 | + | -1.3 | |||
453,808 | + | -0.3 | |||
453,808 | + | -0.7 | |||
453,808 | + | +1.0 | |||
453,808 | + | -3.7 | |||
453,808 | + | -2.4 | |||
453,808 | + | -1.8 | |||
453,808 | + | -1.7 | |||
453,808 | + | +0.4 | |||
453,808 | + | -0.2 | |||
453,809 | - | -1.6 | |||
453,809 | - | +0.2 | |||
453,809 | - | -1.4 | |||
453,809 | - | -1.1 | |||
453,809 | - | -2.1 | |||
453,809 | - | -0.8 | |||
453,810 | + | -2.1 | |||
453,810 | + | -0.8 | |||
453,810 | + | -2.4 | |||
453,810 | + | -0.6 | |||
453,810 | + | -2.3 | |||
453,810 | + | -0.6 | |||
453,810 | + | +0.7 | |||
453,810 | + | -0.6 | |||
453,810 | + | -0.3 | |||
453,810 | + | -2.4 | |||
453,811 | - | -0.3 | |||
453,811 | - | -2.6 | |||
453,834 | + | +0.2 | |||
453,834 | + | +0.2 | |||
453,834 | + | -1.8 | |||
454,003 | + | -1.3 | |||
454,003 | + | -1.8 | |||
454,004 | - | -1.3 | |||
454,103 | + | aceE | Sama_0375 | 0.10 | -2.2 |
454,103 | + | aceE | Sama_0375 | 0.10 | -1.7 |
454,103 | + | aceE | Sama_0375 | 0.10 | -1.3 |
454,103 | + | aceE | Sama_0375 | 0.10 | -1.7 |
454,103 | + | aceE | Sama_0375 | 0.10 | +1.3 |
454,104 | - | aceE | Sama_0375 | 0.10 | -2.2 |
454,104 | - | aceE | Sama_0375 | 0.10 | -2.1 |
454,104 | - | aceE | Sama_0375 | 0.10 | -1.7 |
454,106 | + | aceE | Sama_0375 | 0.10 | -0.8 |
454,106 | + | aceE | Sama_0375 | 0.10 | +0.2 |
454,177 | + | aceE | Sama_0375 | 0.13 | -0.8 |
454,178 | - | aceE | Sama_0375 | 0.13 | -0.8 |
454,178 | - | aceE | Sama_0375 | 0.13 | -1.3 |
454,241 | - | aceE | Sama_0375 | 0.15 | -0.8 |
454,243 | + | aceE | Sama_0375 | 0.16 | -2.4 |
454,270 | + | aceE | Sama_0375 | 0.17 | -2.4 |
454,270 | + | aceE | Sama_0375 | 0.17 | -1.3 |
454,271 | - | aceE | Sama_0375 | 0.17 | -0.8 |
454,272 | + | aceE | Sama_0375 | 0.17 | -1.3 |
454,422 | + | aceE | Sama_0375 | 0.22 | -1.6 |
454,501 | + | aceE | Sama_0375 | 0.25 | -1.1 |
454,551 | + | aceE | Sama_0375 | 0.27 | -3.0 |
454,551 | + | aceE | Sama_0375 | 0.27 | -1.6 |
454,694 | + | aceE | Sama_0375 | 0.32 | +1.1 |
454,695 | - | aceE | Sama_0375 | 0.32 | +0.1 |
454,695 | - | aceE | Sama_0375 | 0.32 | -0.9 |
454,703 | + | aceE | Sama_0375 | 0.33 | -1.9 |
454,703 | + | aceE | Sama_0375 | 0.33 | -1.3 |
454,704 | - | aceE | Sama_0375 | 0.33 | -0.9 |
454,704 | - | aceE | Sama_0375 | 0.33 | +0.1 |
454,822 | + | aceE | Sama_0375 | 0.37 | -1.9 |
454,822 | + | aceE | Sama_0375 | 0.37 | -0.9 |
454,822 | + | aceE | Sama_0375 | 0.37 | -1.6 |
454,823 | - | aceE | Sama_0375 | 0.37 | -1.9 |
454,845 | + | aceE | Sama_0375 | 0.38 | -2.1 |
454,849 | + | aceE | Sama_0375 | 0.38 | -0.6 |
454,904 | + | aceE | Sama_0375 | 0.40 | -1.3 |
454,936 | + | aceE | Sama_0375 | 0.41 | -0.6 |
455,000 | + | aceE | Sama_0375 | 0.44 | -0.6 |
455,146 | + | aceE | Sama_0375 | 0.49 | -0.3 |
455,236 | - | aceE | Sama_0375 | 0.52 | -2.4 |
455,307 | + | aceE | Sama_0375 | 0.55 | -0.6 |
455,307 | + | aceE | Sama_0375 | 0.55 | +0.1 |
455,386 | - | aceE | Sama_0375 | 0.58 | -1.7 |
455,386 | - | aceE | Sama_0375 | 0.58 | -1.1 |
455,442 | + | aceE | Sama_0375 | 0.60 | -0.3 |
455,443 | - | aceE | Sama_0375 | 0.60 | -0.3 |
455,446 | + | aceE | Sama_0375 | 0.60 | -0.9 |
455,446 | + | aceE | Sama_0375 | 0.60 | -1.9 |
455,446 | + | aceE | Sama_0375 | 0.60 | -1.6 |
455,447 | - | aceE | Sama_0375 | 0.60 | -1.4 |
455,447 | - | aceE | Sama_0375 | 0.60 | -1.6 |
455,447 | - | aceE | Sama_0375 | 0.60 | -2.4 |
455,447 | - | aceE | Sama_0375 | 0.60 | -0.3 |
455,449 | - | aceE | Sama_0375 | 0.60 | +0.1 |
455,468 | - | aceE | Sama_0375 | 0.61 | +0.1 |
455,468 | - | aceE | Sama_0375 | 0.61 | -0.9 |
455,497 | + | aceE | Sama_0375 | 0.62 | +1.7 |
455,497 | + | aceE | Sama_0375 | 0.62 | -2.4 |
455,498 | - | aceE | Sama_0375 | 0.62 | -0.6 |
455,500 | + | aceE | Sama_0375 | 0.62 | -2.4 |
455,526 | - | aceE | Sama_0375 | 0.63 | -1.3 |
455,538 | + | aceE | Sama_0375 | 0.64 | -1.6 |
455,538 | + | aceE | Sama_0375 | 0.64 | -0.6 |
455,620 | + | aceE | Sama_0375 | 0.67 | -1.1 |
455,620 | + | aceE | Sama_0375 | 0.67 | -1.7 |
455,620 | + | aceE | Sama_0375 | 0.67 | -1.4 |
455,621 | - | aceE | Sama_0375 | 0.67 | -1.6 |
455,621 | - | aceE | Sama_0375 | 0.67 | -0.9 |
455,626 | + | aceE | Sama_0375 | 0.67 | -1.7 |
455,626 | + | aceE | Sama_0375 | 0.67 | -0.9 |
455,626 | + | aceE | Sama_0375 | 0.67 | -1.7 |
455,627 | - | aceE | Sama_0375 | 0.67 | -1.3 |
455,627 | - | aceE | Sama_0375 | 0.67 | -1.4 |
455,627 | - | aceE | Sama_0375 | 0.67 | -1.3 |
455,629 | + | aceE | Sama_0375 | 0.67 | -1.1 |
455,629 | + | aceE | Sama_0375 | 0.67 | +0.3 |
455,629 | + | aceE | Sama_0375 | 0.67 | -0.9 |
455,630 | - | aceE | Sama_0375 | 0.67 | -2.4 |
455,725 | - | aceE | Sama_0375 | 0.71 | +0.1 |
455,793 | + | aceE | Sama_0375 | 0.73 | -1.3 |
455,794 | - | aceE | Sama_0375 | 0.73 | -0.6 |
455,799 | + | aceE | Sama_0375 | 0.73 | -1.6 |
455,800 | - | aceE | Sama_0375 | 0.73 | -2.4 |
455,800 | - | aceE | Sama_0375 | 0.73 | -0.9 |
455,825 | - | aceE | Sama_0375 | 0.74 | -1.6 |
455,866 | + | aceE | Sama_0375 | 0.76 | -1.7 |
455,866 | + | aceE | Sama_0375 | 0.76 | -1.3 |
455,866 | + | aceE | Sama_0375 | 0.76 | -1.1 |
455,866 | + | aceE | Sama_0375 | 0.76 | +1.1 |
455,866 | + | aceE | Sama_0375 | 0.76 | -2.9 |
455,866 | + | aceE | Sama_0375 | 0.76 | -1.6 |
455,867 | - | aceE | Sama_0375 | 0.76 | -1.3 |
455,867 | - | aceE | Sama_0375 | 0.76 | -1.6 |
455,867 | - | aceE | Sama_0375 | 0.76 | -1.4 |
455,890 | + | aceE | Sama_0375 | 0.77 | -1.6 |
455,890 | + | aceE | Sama_0375 | 0.77 | -2.4 |
455,891 | - | aceE | Sama_0375 | 0.77 | -1.7 |
455,917 | + | aceE | Sama_0375 | 0.78 | -0.3 |
455,971 | + | aceE | Sama_0375 | 0.80 | -1.7 |
455,971 | + | aceE | Sama_0375 | 0.80 | -1.3 |
455,989 | - | aceE | Sama_0375 | 0.80 | -0.3 |
456,010 | + | aceE | Sama_0375 | 0.81 | -0.6 |
456,010 | + | aceE | Sama_0375 | 0.81 | -1.7 |
456,010 | + | aceE | Sama_0375 | 0.81 | -1.6 |
456,071 | + | aceE | Sama_0375 | 0.83 | -2.0 |
456,071 | + | aceE | Sama_0375 | 0.83 | +2.8 |
456,072 | - | aceE | Sama_0375 | 0.83 | -1.1 |
456,072 | - | aceE | Sama_0375 | 0.83 | +2.5 |
456,111 | - | aceE | Sama_0375 | 0.85 | -2.1 |
456,111 | - | aceE | Sama_0375 | 0.85 | -1.7 |
456,183 | + | aceE | Sama_0375 | 0.88 | -1.1 |
456,183 | + | aceE | Sama_0375 | 0.88 | -1.9 |
456,183 | + | aceE | Sama_0375 | 0.88 | -1.4 |
456,184 | - | aceE | Sama_0375 | 0.88 | -0.9 |
456,217 | + | aceE | Sama_0375 | 0.89 | -1.7 |
456,217 | + | aceE | Sama_0375 | 0.89 | -1.6 |
456,217 | + | aceE | Sama_0375 | 0.89 | -0.3 |
456,217 | + | aceE | Sama_0375 | 0.89 | -1.3 |
456,217 | + | aceE | Sama_0375 | 0.89 | -0.6 |
456,217 | + | aceE | Sama_0375 | 0.89 | -0.9 |
456,218 | - | aceE | Sama_0375 | 0.89 | -1.3 |
456,218 | - | aceE | Sama_0375 | 0.89 | -1.1 |
456,218 | - | aceE | Sama_0375 | 0.89 | -0.3 |
456,265 | + | -2.4 | |||
456,278 | - | -0.3 | |||
456,316 | + | -1.0 | |||
456,316 | + | -0.9 | |||
456,697 | - | -0.9 | |||
456,854 | - | aceF | Sama_0376 | 0.17 | -1.2 |
456,854 | - | aceF | Sama_0376 | 0.17 | -2.4 |
456,949 | + | aceF | Sama_0376 | 0.22 | -1.4 |
456,949 | + | aceF | Sama_0376 | 0.22 | -0.9 |
456,968 | + | aceF | Sama_0376 | 0.23 | +0.1 |
457,029 | - | aceF | Sama_0376 | 0.26 | -1.1 |
457,286 | + | aceF | Sama_0376 | 0.39 | -2.4 |
457,287 | - | aceF | Sama_0376 | 0.39 | -2.4 |
457,294 | + | aceF | Sama_0376 | 0.40 | -0.6 |
457,320 | - | aceF | Sama_0376 | 0.41 | -0.6 |
457,384 | + | aceF | Sama_0376 | 0.44 | -0.6 |
457,496 | + | aceF | Sama_0376 | 0.50 | -0.6 |
457,496 | + | aceF | Sama_0376 | 0.50 | -1.6 |
Or see this region's nucleotide sequence