Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0264 and rpoZ are separated by 24 nucleotides rpoZ and gmk are separated by 77 nucleotides gmk and Sama_0267 are separated by 187 nucleotides
Sama_0264: Sama_0264 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq), at 302,833 to 304,932
_0264
Sama_0265: rpoZ - DNA-directed RNA polymerase subunit omega (RefSeq), at 304,957 to 305,235
rpoZ
Sama_0266: gmk - guanylate kinase (RefSeq), at 305,313 to 305,936
gmk
Sama_0267: Sama_0267 - hypothetical protein (RefSeq), at 306,124 to 307,608
_0267
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 304.136 kb on - strand, within Sama_0264 at 304.912 kb on + strand at 304.913 kb on - strand at 304.929 kb on - strand at 304.929 kb on - strand at 304.940 kb on - strand at 304.959 kb on - strand at 304.959 kb on - strand at 305.218 kb on + strand at 305.219 kb on - strand at 305.219 kb on - strand at 305.219 kb on - strand at 305.225 kb on - strand at 305.238 kb on - strand at 305.238 kb on - strand at 305.263 kb on - strand at 305.263 kb on - strand at 305.301 kb on - strand at 305.301 kb on - strand at 305.305 kb on + strand at 305.305 kb on + strand at 305.306 kb on - strand at 305.306 kb on - strand at 305.306 kb on - strand at 305.333 kb on + strand at 305.334 kb on - strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.340 kb on - strand at 305.340 kb on - strand at 305.373 kb on + strand at 306.001 kb on - strand at 306.001 kb on - strand at 306.013 kb on - strand at 306.013 kb on - strand at 306.015 kb on - strand at 306.015 kb on - strand at 306.081 kb on - strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.145 kb on - strand at 306.145 kb on - strand at 306.175 kb on - strand at 306.200 kb on - strand at 306.200 kb on - strand at 306.200 kb on - strand at 306.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 304,136 - Sama_0264 0.62 +1.0 304,912 + -3.2 304,913 - -0.7 304,929 - -1.0 304,929 - -2.2 304,940 - -1.6 304,959 - -0.3 304,959 - -0.1 305,218 + +0.4 305,219 - -2.3 305,219 - -1.6 305,219 - -0.6 305,225 - -0.0 305,238 - -2.7 305,238 - -2.4 305,263 - -1.5 305,263 - -1.0 305,301 - +1.3 305,301 - -1.6 305,305 + -1.5 305,305 + -2.1 305,306 - -0.8 305,306 - +1.8 305,306 - -1.4 305,333 + +1.1 305,334 - -0.5 305,339 + -1.4 305,339 + -0.6 305,339 + -0.9 305,339 + -0.8 305,340 - -0.0 305,340 - +1.1 305,373 + -2.9 306,001 - -0.2 306,001 - +2.8 306,013 - -1.8 306,013 - +3.0 306,015 - -2.0 306,015 - -0.5 306,081 - -1.0 306,095 + -0.1 306,095 + +0.7 306,095 + -0.9 306,095 + -1.8 306,095 + -1.7 306,095 + -1.7 306,095 + -0.1 306,095 + +0.1 306,095 + +1.1 306,095 + -0.5 306,095 + -2.8 306,096 - -1.3 306,096 - -0.5 306,096 - +2.0 306,096 - +0.6 306,096 - -3.0 306,096 - +1.0 306,096 - -0.3 306,096 - +0.6 306,096 - -1.4 306,096 - -0.2 306,096 - +1.7 306,097 + +0.5 306,097 + -1.9 306,097 + -0.9 306,097 + -0.2 306,097 + +0.8 306,097 + +1.6 306,097 + +1.5 306,097 + -1.0 306,097 + +0.5 306,098 - -1.9 306,098 - -3.4 306,098 - +0.5 306,098 - -1.1 306,098 - -0.2 306,145 - -1.0 306,145 - +3.8 306,175 - -2.0 306,200 - -0.1 306,200 - -2.4 306,200 - +0.4 306,200 - +0.0
Or see this region's nucleotide sequence