Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3827 and Dshi_3828 are separated by 37 nucleotides Dshi_3828 and Dshi_3829 are separated by 127 nucleotides Dshi_3829 and Dshi_3830 are separated by 305 nucleotides
Dshi_3827: Dshi_3827 - phenylacetic acid degradation protein paaN (RefSeq), at 34,493 to 36,529
_3827
Dshi_3828: Dshi_3828 - putative transcriptional regulator, PaaX family (RefSeq), at 36,567 to 37,361
_3828
Dshi_3829: Dshi_3829 - hypothetical protein (RefSeq), at 37,489 to 37,941
_3829
Dshi_3830: Dshi_3830 - Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (RefSeq), at 38,247 to 39,386
_3830
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1 at 35.583 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.907 kb on + strand, within Dshi_3827 at 35.917 kb on + strand, within Dshi_3827 at 35.963 kb on - strand, within Dshi_3827 at 36.018 kb on + strand, within Dshi_3827 at 36.072 kb on + strand, within Dshi_3827 at 36.155 kb on + strand, within Dshi_3827 at 36.336 kb on - strand at 36.432 kb on - strand at 36.575 kb on - strand at 36.612 kb on + strand at 36.626 kb on + strand at 36.626 kb on + strand at 36.644 kb on - strand at 36.668 kb on + strand, within Dshi_3828 at 36.691 kb on - strand, within Dshi_3828 at 36.696 kb on - strand, within Dshi_3828 at 36.798 kb on + strand, within Dshi_3828 at 36.923 kb on + strand, within Dshi_3828 at 36.941 kb on - strand, within Dshi_3828 at 37.064 kb on - strand, within Dshi_3828 at 37.080 kb on + strand, within Dshi_3828 at 37.102 kb on + strand, within Dshi_3828 at 37.255 kb on + strand, within Dshi_3828 at 37.263 kb on - strand, within Dshi_3828 at 37.270 kb on + strand, within Dshi_3828 at 37.365 kb on - strand at 37.454 kb on - strand at 37.511 kb on + strand at 37.517 kb on + strand at 37.568 kb on + strand, within Dshi_3829 at 37.586 kb on + strand, within Dshi_3829 at 37.594 kb on - strand, within Dshi_3829 at 37.643 kb on + strand, within Dshi_3829 at 37.653 kb on + strand, within Dshi_3829 at 37.694 kb on - strand, within Dshi_3829 at 37.748 kb on + strand, within Dshi_3829 at 37.756 kb on - strand, within Dshi_3829 at 37.879 kb on + strand, within Dshi_3829 at 37.981 kb on + strand at 37.989 kb on - strand at 38.109 kb on + strand at 38.136 kb on - strand at 38.156 kb on - strand at 38.212 kb on - strand at 38.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 35,583 - Dshi_3827 0.54 +0.9 35,594 - Dshi_3827 0.54 +0.1 35,594 - Dshi_3827 0.54 +0.1 35,907 + Dshi_3827 0.69 +0.5 35,917 + Dshi_3827 0.70 -0.0 35,963 - Dshi_3827 0.72 +0.3 36,018 + Dshi_3827 0.75 -0.0 36,072 + Dshi_3827 0.78 -1.1 36,155 + Dshi_3827 0.82 +0.0 36,336 - +0.9 36,432 - +0.6 36,575 - +0.2 36,612 + +0.5 36,626 + -1.1 36,626 + -0.3 36,644 - -0.5 36,668 + Dshi_3828 0.13 +0.4 36,691 - Dshi_3828 0.16 -1.5 36,696 - Dshi_3828 0.16 -0.3 36,798 + Dshi_3828 0.29 -0.1 36,923 + Dshi_3828 0.45 -0.2 36,941 - Dshi_3828 0.47 -0.3 37,064 - Dshi_3828 0.63 -0.1 37,080 + Dshi_3828 0.65 -0.0 37,102 + Dshi_3828 0.67 -0.9 37,255 + Dshi_3828 0.87 -1.6 37,263 - Dshi_3828 0.88 +0.7 37,270 + Dshi_3828 0.88 -0.4 37,365 - +1.6 37,454 - -0.8 37,511 + +0.0 37,517 + -0.9 37,568 + Dshi_3829 0.17 -0.3 37,586 + Dshi_3829 0.21 -0.1 37,594 - Dshi_3829 0.23 +0.2 37,643 + Dshi_3829 0.34 +0.9 37,653 + Dshi_3829 0.36 -0.3 37,694 - Dshi_3829 0.45 -0.4 37,748 + Dshi_3829 0.57 -0.5 37,756 - Dshi_3829 0.59 +0.2 37,879 + Dshi_3829 0.86 +0.7 37,981 + -0.3 37,989 - -0.0 38,109 + +0.0 38,136 - -0.8 38,156 - +0.2 38,212 - +0.2 38,352 + +1.2
Or see this region's nucleotide sequence