Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3382

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
3,555,194	+		Dshi_3381	0.44	+2.6
3,555,202	-		Dshi_3381	0.44	-1.6
3,555,218	+		Dshi_3381	0.45	-0.8
3,555,229	-		Dshi_3381	0.46	-1.6
3,555,231	-		Dshi_3381	0.46	-1.1
3,555,242	-		Dshi_3381	0.47	-0.8
3,555,304	-		Dshi_3381	0.50	-2.7
3,555,328	+		Dshi_3381	0.52	-1.4
3,555,330	+		Dshi_3381	0.52	-0.6
3,555,333	-		Dshi_3381	0.52	-0.0
3,555,343	-		Dshi_3381	0.52	-0.8
3,555,371	+		Dshi_3381	0.54	-1.8
3,555,456	+		Dshi_3381	0.59	-3.8
3,555,456	+		Dshi_3381	0.59	-2.4
3,555,458	+		Dshi_3381	0.59	+0.6
3,555,472	+		Dshi_3381	0.60	+0.6
3,555,475	-		Dshi_3381	0.60	-0.9
3,555,525	+		Dshi_3381	0.63	-0.8
3,555,548	-		Dshi_3381	0.64	-2.0
3,555,564	-		Dshi_3381	0.65	+1.0
3,555,617	+		Dshi_3381	0.68	+0.2
3,555,617	+		Dshi_3381	0.68	-1.4
3,555,618	+		Dshi_3381	0.68	-1.5
3,555,618	+		Dshi_3381	0.68	-2.4
3,555,623	+		Dshi_3381	0.68	+1.0
3,555,626	-		Dshi_3381	0.68	-0.3
3,555,626	-		Dshi_3381	0.68	-1.8
3,555,667	+		Dshi_3381	0.71	-0.8
3,555,699	+		Dshi_3381	0.72	-1.8
3,555,705	+		Dshi_3381	0.73	-1.9
3,555,740	-		Dshi_3381	0.75	-2.1
3,555,785	-		Dshi_3381	0.77	-1.8
3,555,834	-		Dshi_3381	0.80	-2.8
3,555,866	-		Dshi_3381	0.82	+0.6
3,555,868	+		Dshi_3381	0.82	-1.7
3,555,869	+		Dshi_3381	0.82	+0.2
3,555,876	-		Dshi_3381	0.82	-1.5
3,555,951	+		Dshi_3381	0.86	+2.6
3,555,969	+		Dshi_3381	0.87	-0.4
3,555,996	-		Dshi_3381	0.89	-1.3
3,556,038	-				-2.9
3,556,089	+				-1.0
3,556,097	-				-1.1
3,556,099	+				+0.6
3,556,112	+				-0.4
3,556,130	+				+1.0
3,556,130	+				+0.6
3,556,130	+				+0.2
3,556,138	-				-0.8
3,556,138	-				-0.9
3,556,152	+				+1.0
3,556,155	-				+0.2
3,556,162	+				-0.4
3,556,205	+				-1.0
3,556,241	-				-2.3
3,556,289	-				-2.0
3,556,315	-				-0.9
3,556,330	-				+0.2
3,556,332	+				-0.4
3,556,335	-				-2.4
3,556,344	+				+2.6
3,556,344	+				-2.7
3,556,352	-				+1.0
3,556,352	-				-3.4
3,556,384	-				-2.9
3,556,417	+				-1.3
3,556,422	+				+2.6
3,556,438	+				+1.0
3,556,444	-				-0.6
3,556,446	-				-0.4
3,556,451	+				-0.3
3,556,459	-				+0.2
3,556,459	-				-0.0
3,556,643	+		Dshi_3382	0.14	+1.6
3,556,714	-		Dshi_3382	0.16	-0.4
3,556,728	+		Dshi_3382	0.17	-0.6
3,556,829	+		Dshi_3382	0.20	+1.6
3,556,934	+		Dshi_3382	0.23	-1.1
3,556,935	-		Dshi_3382	0.23	-0.0
3,556,942	-		Dshi_3382	0.23	+0.6
3,556,942	-		Dshi_3382	0.23	-1.7
3,556,949	-		Dshi_3382	0.23	-0.0
3,556,977	-		Dshi_3382	0.24	-0.6
3,556,984	-		Dshi_3382	0.24	+1.6
3,557,019	+		Dshi_3382	0.25	-2.8
3,557,027	+		Dshi_3382	0.26	-1.4
3,557,048	+		Dshi_3382	0.26	+1.6
3,557,056	+		Dshi_3382	0.27	-2.0
3,557,108	-		Dshi_3382	0.28	-0.3
3,557,273	-		Dshi_3382	0.33	+1.0
3,557,312	+		Dshi_3382	0.35	-0.3
3,557,331	+		Dshi_3382	0.35	-0.0
3,557,362	-		Dshi_3382	0.36	-2.5
3,557,410	+		Dshi_3382	0.38	-1.4
3,557,449	+		Dshi_3382	0.39	+1.0
3,557,454	-		Dshi_3382	0.39	+0.2
3,557,454	-		Dshi_3382	0.39	-0.8
3,557,455	+		Dshi_3382	0.39	-1.0
3,557,468	-		Dshi_3382	0.39	-1.3
3,557,468	-		Dshi_3382	0.39	+1.6
3,557,574	-		Dshi_3382	0.43	-0.9
3,557,587	+		Dshi_3382	0.43	-1.1
3,557,598	+		Dshi_3382	0.43	-0.3
3,557,609	+		Dshi_3382	0.44	+0.2
3,557,617	-		Dshi_3382	0.44	-0.3
3,557,709	+		Dshi_3382	0.47	+2.6
3,557,719	+		Dshi_3382	0.47	+0.2
3,557,844	+		Dshi_3382	0.51	-0.9
3,557,847	+		Dshi_3382	0.51	+1.0
3,557,852	-		Dshi_3382	0.51	-0.4
3,557,869	-		Dshi_3382	0.52	+0.6
3,557,904	-		Dshi_3382	0.53	-0.0
3,557,917	+		Dshi_3382	0.53	-1.4
3,557,995	-		Dshi_3382	0.55	-2.1
3,558,117	-		Dshi_3382	0.59	-0.8
3,558,117	-		Dshi_3382	0.59	-1.8
3,558,117	-		Dshi_3382	0.59	-0.9
3,558,190	-		Dshi_3382	0.61	-0.8
3,558,288	-		Dshi_3382	0.64	+0.6
3,558,304	-		Dshi_3382	0.65	-1.3
3,558,314	+		Dshi_3382	0.65	-1.3
3,558,356	+		Dshi_3382	0.67	-1.4
3,558,440	+		Dshi_3382	0.69	-0.0
3,558,440	+		Dshi_3382	0.69	-0.6
3,558,440	+		Dshi_3382	0.69	+0.2
3,558,440	+		Dshi_3382	0.69	-0.3
3,558,448	-		Dshi_3382	0.69	+1.0
3,558,569	+		Dshi_3382	0.73	-0.8
3,558,577	-		Dshi_3382	0.73	-1.5
3,558,582	-		Dshi_3382	0.74	-0.0
3,558,716	-		Dshi_3382	0.78	-1.5
3,558,933	-		Dshi_3382	0.84	-0.6
3,558,953	+		Dshi_3382	0.85	-1.0
3,559,004	+		Dshi_3382	0.86	+1.0
3,559,004	+		Dshi_3382	0.86	-1.3
3,559,043	+		Dshi_3382	0.88	+1.4
3,559,096	-		Dshi_3382	0.89	-1.1
3,559,125	-				+0.6
3,559,184	+				-0.3
3,559,184	+				+2.6
3,559,271	+				-2.0
3,559,287	+				-0.8
3,559,321	-				-0.9
3,559,519	+		Dshi_3383	0.12	+1.1
3,559,583	-		Dshi_3383	0.21	-1.0
3,559,613	+		Dshi_3383	0.25	-2.7
3,559,836	-		Dshi_3383	0.57	+1.0
3,560,199	-				-0.1
3,560,225	+				-1.1
3,560,289	-				-0.1
3,560,309	+				-0.7
3,560,332	-				+1.4
3,560,358	-				-0.8
3,560,360	+				+0.8
3,560,368	-		Dshi_3384	0.10	+0.6
3,560,404	-		Dshi_3384	0.13	+1.4
3,560,406	+		Dshi_3384	0.13	-0.0
3,560,406	+		Dshi_3384	0.13	+0.7
3,560,414	-		Dshi_3384	0.13	-0.1
3,560,416	+		Dshi_3384	0.13	+0.4