Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2983

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
3,148,327	+		Dshi_2981	0.67	+1.7
3,148,327	+		Dshi_2981	0.67	-1.0
3,148,327	+		Dshi_2981	0.67	-1.9
3,148,327	+		Dshi_2981	0.67	-0.1
3,148,335	-		Dshi_2981	0.68	-0.6
3,148,396	-		Dshi_2981	0.72	-0.4
3,148,397	+		Dshi_2981	0.72	-0.5
3,148,448	-		Dshi_2981	0.76	+0.2
3,148,473	+		Dshi_2981	0.78	-2.0
3,148,581	+		Dshi_2981	0.87	-0.4
3,148,608	-		Dshi_2981	0.89	-0.6
3,148,713	-				-0.4
3,148,722	+				-0.7
3,148,751	-				-0.4
3,148,751	-				+0.6
3,148,772	-				+0.2
3,148,782	-				-1.5
3,148,882	+		Dshi_2982	0.18	+0.9
3,148,882	+		Dshi_2982	0.18	+0.3
3,149,019	+		Dshi_2982	0.57	+1.3
3,149,147	+				-0.4
3,149,158	+				+0.5
3,149,171	-				-0.1
3,149,218	+				-2.6
3,149,226	-				-0.3
3,149,310	-				-0.8
3,149,361	-		Dshi_2983	0.13	-0.2
3,149,427	+		Dshi_2983	0.19	-0.7
3,149,466	+		Dshi_2983	0.23	+0.0
3,149,535	-		Dshi_2983	0.30	-0.2
3,149,554	+		Dshi_2983	0.32	-0.6
3,149,584	+		Dshi_2983	0.35	-0.4
3,149,652	-		Dshi_2983	0.42	-0.6
3,149,659	+		Dshi_2983	0.43	-0.0
3,149,798	-		Dshi_2983	0.57	+0.7
3,149,928	-		Dshi_2983	0.70	+0.7
3,149,934	+		Dshi_2983	0.70	+0.6
3,149,934	+		Dshi_2983	0.70	+0.1
3,149,942	-		Dshi_2983	0.71	+0.0
3,150,010	-		Dshi_2983	0.78	+0.3
3,150,079	-		Dshi_2983	0.85	+0.2
3,150,118	-		Dshi_2983	0.89	+0.4
3,150,180	+				-0.4
3,150,295	+				+1.6
3,150,295	+				+0.2
3,150,303	-				-1.2
3,150,303	-				+1.1
3,150,369	+				-0.7
3,150,375	+				+0.5
3,150,377	-				+0.5
3,150,452	-		Dshi_2984	0.20	+1.3
3,150,459	+		Dshi_2984	0.21	-0.4
3,150,469	+		Dshi_2984	0.23	-0.3
3,150,477	-		Dshi_2984	0.24	-1.4
3,150,502	-		Dshi_2984	0.27	-0.3
3,150,511	+		Dshi_2984	0.29	-0.2
3,150,556	-		Dshi_2984	0.35	+0.3
3,150,692	+		Dshi_2984	0.55	-0.4
3,150,696	+		Dshi_2984	0.55	-1.2
3,150,696	+		Dshi_2984	0.55	-0.6
3,150,704	-		Dshi_2984	0.56	-0.0
3,150,704	-		Dshi_2984	0.56	+0.2
3,150,720	-		Dshi_2984	0.59	+0.1
3,150,731	+		Dshi_2984	0.60	-0.6
3,150,739	-		Dshi_2984	0.61	-0.4
3,150,739	-		Dshi_2984	0.61	-0.1
3,150,765	+		Dshi_2984	0.65	+1.8
3,150,773	-		Dshi_2984	0.66	-0.8
3,150,806	+		Dshi_2984	0.71	-0.7
3,150,806	+		Dshi_2984	0.71	-0.1
3,150,806	+		Dshi_2984	0.71	-0.8
3,150,806	+		Dshi_2984	0.71	-0.0
3,150,814	-		Dshi_2984	0.72	-1.2
3,150,821	+		Dshi_2984	0.73	+1.3
3,150,829	-		Dshi_2984	0.74	-0.1
3,150,836	+		Dshi_2984	0.75	+0.1
3,150,836	+		Dshi_2984	0.75	-0.5
3,150,884	+		Dshi_2984	0.82	+3.3
3,150,889	+		Dshi_2984	0.83	+0.2
3,150,889	+		Dshi_2984	0.83	-1.6
3,150,889	+		Dshi_2984	0.83	-2.2
3,150,889	+		Dshi_2984	0.83	+1.5
3,150,897	-		Dshi_2984	0.84	+0.2
3,150,897	-		Dshi_2984	0.84	-0.7
3,150,897	-		Dshi_2984	0.84	+0.1
3,150,897	-		Dshi_2984	0.84	+0.2
3,150,897	-		Dshi_2984	0.84	+0.2
3,150,897	-		Dshi_2984	0.84	-2.1
3,150,897	-		Dshi_2984	0.84	-1.0
3,150,904	-		Dshi_2984	0.85	-0.3
3,150,944	+				-0.2
3,150,944	+				+0.3
3,150,945	+				-0.3
3,150,945	+				+0.3
3,150,953	-				-0.1
3,150,953	-				-0.4
3,150,953	-				-0.0
3,150,954	+				+0.2
3,150,962	-				+0.2
3,150,973	+				-0.2
3,150,979	+				+0.3
3,150,979	+				-0.3
3,150,979	+				+0.0
3,150,979	+				+0.4
3,150,979	+				-0.5
3,150,979	+				-1.6
3,150,979	+				-0.5
3,150,980	+				+1.1
3,150,980	+				-0.2
3,150,980	+				-0.5
3,150,980	+				-0.7
3,150,980	+				-0.6
3,150,980	+				+0.1
3,150,980	+				+0.4
3,150,980	+				-1.8
3,150,980	+				-1.1
3,150,980	+				-0.2
3,150,980	+				-2.0
3,150,980	+				-0.6
3,150,980	+				-0.2
3,150,980	+				-0.2
3,150,980	+				-0.4
3,150,980	+				-1.0
3,150,980	+				-1.1
3,150,980	+				-0.6
3,150,987	-				-2.0
3,150,987	-				+0.2
3,150,987	-				+1.4
3,150,987	-				-0.1
3,150,987	-				+0.2
3,150,987	-				-0.7
3,150,987	-				+0.4
3,150,987	-				-1.3
3,150,987	-				-0.1
3,150,987	-				+1.6
3,150,987	-				+0.3
3,150,987	-				+0.6
3,150,987	-				+0.2
3,150,987	-				-0.4
3,150,988	-				+0.3
3,150,988	-				+0.2
3,150,988	-				+0.1
3,150,988	-				-0.8
3,150,988	-				+0.4
3,150,988	-				-0.0
3,150,988	-				+1.4
3,150,988	-				-0.1
3,150,988	-				-0.2
3,150,988	-				-0.0
3,150,988	-				-0.0
3,150,988	-				-0.6
3,150,988	-				-0.1
3,150,988	-				-0.5
3,150,988	-				-0.7
3,150,988	-				-0.2
3,150,988	-				-0.5
3,150,988	-				-0.4
3,150,988	-				-0.3
3,150,988	-				-0.5
3,150,988	-				-0.3
3,150,988	-				+0.1
3,150,988	-				+0.2
3,150,988	-				+0.6
3,150,988	-				-0.5
3,150,988	-				+0.3
3,150,988	-				-1.4
3,150,988	-				+0.2
3,150,988	-				-1.6
3,150,988	-				-0.3
3,150,988	-				+0.2
3,150,988	-				-0.5
3,150,988	-				-0.5
3,150,988	-				+0.1
3,150,988	-				+0.3
3,150,988	-				-0.3
3,150,988	-				+0.7
3,150,989	+				-0.8
3,150,989	+				+0.2
3,150,989	+				-0.6
3,150,989	+				+0.7
3,150,989	+				+1.1
3,150,989	+				+0.1
3,150,989	+				+0.8
3,150,989	+				-2.7
3,150,989	+				-0.1
3,150,989	+				+1.5
3,150,989	+				-0.9
3,150,989	+				-0.0
3,150,989	+				-0.2
3,150,989	+				+0.7
3,150,989	+				-0.6
3,150,989	+				+0.2
3,150,989	+				+0.8
3,150,989	+				-0.5
3,150,989	+				+0.4
3,150,989	+				+0.3
3,150,989	+				-0.7
3,150,989	+				+1.1
3,150,989	+				+1.6
3,150,989	+				-2.2
3,150,989	+				+0.1
3,150,989	+				-0.3
3,150,989	+				-0.1
3,150,989	+				-0.3
3,150,989	+				+0.2
3,150,989	+				-0.7
3,150,989	+				-0.4
3,150,989	+				-0.4
3,150,989	+				-1.7
3,150,989	+				+0.6
3,150,989	+				+1.2
3,150,989	+				+0.1
3,150,989	+				+1.0
3,150,989	+				-0.2
3,150,989	+				-1.2
3,150,989	+				+1.2
3,150,989	+				+0.7
3,150,989	+				+0.5
3,150,989	+				+0.3
3,150,989	+				+0.7
3,150,989	+				+0.4
3,150,989	+				+0.4
3,150,989	+				+0.7
3,150,989	+				-0.0
3,150,990	+				+0.2
3,150,990	+				+0.1
3,150,990	+				-0.8
3,150,990	+				-1.3
3,150,990	+				+1.2
3,150,990	+				+1.5
3,150,990	+				-0.7
3,150,990	+				-0.5
3,150,990	+				-0.2
3,150,994	+				-0.4
3,150,995	+				+0.1
3,150,997	-				-1.1
3,150,997	-				-0.8
3,150,997	-				-0.7
3,150,997	-				+0.2
3,150,997	-				-0.3
3,150,997	-				+0.5
3,150,997	-				+0.8
3,150,997	-				-0.3
3,150,997	-				+0.2
3,150,997	-				-0.1
3,150,997	-				+0.2
3,150,997	-				-0.3
3,150,997	-				+0.1
3,150,997	-				-0.3
3,150,997	-				-0.8
3,150,997	-				+0.0
3,150,997	-				+0.5
3,150,997	-				-1.5
3,150,997	-				-0.3
3,150,997	-				-0.4
3,150,997	-				-0.2
3,150,997	-				+0.9
3,150,997	-				+0.0
3,150,997	-				-0.3
3,150,997	-				+0.8
3,150,997	-				+0.6
3,150,997	-				-1.5
3,150,997	-				+1.4
3,150,997	-				-0.2
3,150,997	-				-0.8
3,150,997	-				+1.0
3,150,997	-				+0.7
3,150,997	-				+0.5
3,150,997	-				+0.0
3,150,997	-				+0.7
3,150,997	-				-0.2
3,150,997	-				-0.1
3,150,997	-				+0.4
3,150,997	-				-0.7
3,150,997	-				-0.3
3,150,997	-				-0.8
3,150,997	-				+0.1
3,150,997	-				-0.1
3,150,997	-				+0.2
3,150,997	-				-1.3
3,150,997	-				-0.8
3,150,997	-				+0.2
3,150,997	-				-0.5
3,150,997	-				-0.9
3,150,997	-				-0.8
3,150,997	-				+0.9
3,150,997	-				-0.6
3,150,997	-				-0.0
3,150,997	-				-0.4
3,150,997	-				-0.3
3,150,997	-				-0.6
3,150,997	-				+0.6
3,150,997	-				-0.0
3,150,997	-				+0.2
3,150,997	-				-0.7
3,150,997	-				-0.3
3,150,997	-				+0.9
3,150,997	-				+0.2
3,150,997	-				-0.4
3,150,998	-				+0.1
3,150,998	-				-0.7
3,150,998	-				+0.4
3,150,998	-				+0.8
3,150,998	-				-0.0
3,150,998	-				-0.3
3,150,998	-				+0.0
3,150,998	-				+1.7
3,150,998	-				-0.0
3,150,998	-				+0.7
3,150,998	-				+0.7
3,150,998	-				+0.4
3,150,998	-				-0.6
3,150,998	-				-0.7
3,150,998	-				-0.2
3,150,998	-				-1.6
3,150,998	-				-0.3
3,150,999	+				-0.5
3,150,999	+				-2.5
3,151,000	+				+0.5
3,151,002	-				-0.2
3,151,002	-				-0.2
3,151,003	+				+0.6
3,151,005	+				-1.6
3,151,007	-				-0.6
3,151,008	-				+0.2
3,151,008	-				+2.5
3,151,008	-				+0.2
3,151,008	-				-0.1
3,151,011	-				+0.4
3,151,013	-				-0.2
3,151,013	-				-0.1
3,151,013	-				+0.4
3,151,049	+				-1.4
3,151,057	-				-0.8
3,151,061	+				+0.2
3,151,066	+				+0.3
3,151,066	+				-1.3
3,151,066	+				-1.8
3,151,066	+				+0.0
3,151,066	+				+0.4
3,151,066	+				-0.3
3,151,066	+				+0.3
3,151,074	-				-2.0
3,151,074	-				+0.7
3,151,074	-				-0.4
3,151,074	-				+1.2
3,151,074	-				-0.3
3,151,074	-				-0.5
3,151,074	-				-0.4
3,151,074	-				+0.0
3,151,074	-				+0.4
3,151,098	-				-1.2
3,151,104	+				-0.2
3,151,111	+				-0.6
3,151,119	-				+0.4
3,151,119	-				-1.6
3,151,121	+				+0.5
3,151,121	+				+0.2
3,151,123	+				+0.5
3,151,130	-				+0.0
3,151,130	-				+1.2
3,151,130	-				-1.0
3,151,130	-				+0.7
3,151,131	-				+0.6
3,151,131	-				-1.0
3,151,131	-				-0.3
3,151,132	+				+0.8
3,151,132	+				+0.4
3,151,140	-				+0.2
3,151,140	-				-0.6
3,151,141	-				+0.3
3,151,147	+				+0.3
3,151,147	+				-0.4
3,151,148	+				+0.7
3,151,149	-				-0.8
3,151,150	-				+0.4
3,151,155	-				-0.6
3,151,156	-				+1.5
3,151,158	+				-0.8
3,151,158	+				-0.5
3,151,158	+				-0.9
3,151,158	+				-0.1
3,151,158	+				-0.7
3,151,158	+				+0.1
3,151,158	+				-1.1
3,151,158	+				-1.1
3,151,158	+				-0.7
3,151,158	+				-0.0
3,151,158	+				-0.2
3,151,158	+				-0.3
3,151,165	+				-0.3
3,151,165	+				-0.6
3,151,165	+				-0.0
3,151,165	+				-0.3
3,151,165	+				-0.2
3,151,165	+				+0.4
3,151,166	-				+2.0
3,151,166	-				-1.5
3,151,166	-				-2.3
3,151,166	-				-0.9
3,151,166	-				+0.3
3,151,166	-				+0.0
3,151,166	-				-0.4
3,151,166	-				-0.0
3,151,166	-				-0.5
3,151,173	-				+0.4
3,151,186	-				-0.9
3,151,188	+				-1.0
3,151,188	+				+0.4
3,151,188	+				+1.5
3,151,188	+				+0.6
3,151,196	-				-1.8
3,151,196	-				-0.2
3,151,196	-				-0.2
3,151,204	+				-1.0
3,151,206	-				-0.2
3,151,208	-				-0.6
3,151,210	+				-0.1
3,151,213	+				-0.7
3,151,218	-				-1.5
3,151,221	+				+1.0
3,151,221	+				-0.1
3,151,223	+				+0.3
3,151,223	+				-0.2
3,151,229	+				-0.3
3,151,231	-				-0.6
3,151,231	-				-1.0