Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2186

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2184 and Dshi_2185 are separated by 63 nucleotidesDshi_2185 and Dshi_2186 are separated by 263 nucleotidesDshi_2186 and Dshi_2187 are separated by 28 nucleotidesDshi_2187 and Dshi_2188 are separated by 12 nucleotides Dshi_2184: Dshi_2184 - cytochrome B561 (RefSeq), at 2,311,440 to 2,312,642 _2184 Dshi_2185: Dshi_2185 - YceI family protein (RefSeq), at 2,312,706 to 2,313,290 _2185 Dshi_2186: Dshi_2186 - ribosomal protein S6 (RefSeq), at 2,313,554 to 2,313,907 _2186 Dshi_2187: Dshi_2187 - ribosomal protein S18 (RefSeq), at 2,313,936 to 2,314,163 _2187 Dshi_2188: Dshi_2188 - ribosomal protein L9 (RefSeq), at 2,314,176 to 2,314,805 _2188 Position (kb) 2313 2314Strain fitness (log2 ratio) -2 -1 0 1at 2312.636 kb on + strandat 2312.644 kb on - strandat 2312.688 kb on + strandat 2312.741 kb on - strandat 2312.752 kb on + strandat 2312.765 kb on + strand, within Dshi_2185at 2312.772 kb on + strand, within Dshi_2185at 2312.802 kb on + strand, within Dshi_2185at 2312.930 kb on - strand, within Dshi_2185at 2313.072 kb on - strand, within Dshi_2185at 2313.159 kb on + strand, within Dshi_2185at 2313.163 kb on + strand, within Dshi_2185at 2313.172 kb on - strand, within Dshi_2185at 2313.264 kb on - strandat 2313.274 kb on - strandat 2313.292 kb on - strandat 2313.332 kb on - strandat 2314.403 kb on - strand, within Dshi_2188at 2314.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,312,636 + +0.4
2,312,644 - +0.8
2,312,688 + -0.1
2,312,741 - -0.6
2,312,752 + +0.5
2,312,765 + Dshi_2185 0.10 +1.1
2,312,772 + Dshi_2185 0.11 +0.3
2,312,802 + Dshi_2185 0.16 -1.9
2,312,930 - Dshi_2185 0.38 -0.7
2,313,072 - Dshi_2185 0.63 +1.0
2,313,159 + Dshi_2185 0.77 +0.4
2,313,163 + Dshi_2185 0.78 +1.0
2,313,172 - Dshi_2185 0.80 +0.9
2,313,264 - +0.1
2,313,274 - +0.2
2,313,292 - +0.4
2,313,332 - +0.1
2,314,403 - Dshi_2188 0.36 +0.8
2,314,843 + -0.2

Or see this region's nucleotide sequence