Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0616

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0614 and Dshi_0615 are separated by 21 nucleotidesDshi_0615 and Dshi_0616 are separated by 111 nucleotidesDshi_0616 and Dshi_0617 are separated by 372 nucleotides Dshi_0614: Dshi_0614 - hypothetical protein (RefSeq), at 607,171 to 607,452 _0614 Dshi_0615: Dshi_0615 - orotidine 5'-phosphate decarboxylase (RefSeq), at 607,474 to 608,172 _0615 Dshi_0616: Dshi_0616 - hypothetical protein (RefSeq), at 608,284 to 608,697 _0616 Dshi_0617: Dshi_0617 - ATPase AAA-2 domain protein (RefSeq), at 609,070 to 611,685 _0617 Position (kb) 608 609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 607.290 kb on + strand, within Dshi_0614at 607.322 kb on + strand, within Dshi_0614at 607.325 kb on + strand, within Dshi_0614at 607.424 kb on - strandat 607.633 kb on + strand, within Dshi_0615at 607.635 kb on + strand, within Dshi_0615at 607.739 kb on + strand, within Dshi_0615at 607.786 kb on - strand, within Dshi_0615at 607.786 kb on - strand, within Dshi_0615at 607.827 kb on - strand, within Dshi_0615at 607.884 kb on + strand, within Dshi_0615at 607.929 kb on + strand, within Dshi_0615at 607.929 kb on + strand, within Dshi_0615at 607.929 kb on + strand, within Dshi_0615at 608.039 kb on - strand, within Dshi_0615at 608.055 kb on + strand, within Dshi_0615at 608.106 kb on + strandat 608.106 kb on + strandat 608.114 kb on - strandat 608.199 kb on - strandat 608.199 kb on - strandat 608.222 kb on - strandat 608.234 kb on + strandat 608.234 kb on + strandat 608.247 kb on + strandat 608.353 kb on + strand, within Dshi_0616at 608.370 kb on - strand, within Dshi_0616at 608.370 kb on - strand, within Dshi_0616at 608.407 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.443 kb on + strand, within Dshi_0616at 608.451 kb on + strand, within Dshi_0616at 608.480 kb on - strand, within Dshi_0616at 608.489 kb on + strand, within Dshi_0616at 608.589 kb on + strand, within Dshi_0616at 608.589 kb on + strand, within Dshi_0616at 608.604 kb on + strand, within Dshi_0616at 608.617 kb on - strand, within Dshi_0616at 608.636 kb on - strand, within Dshi_0616at 608.761 kb on + strandat 608.823 kb on - strandat 608.880 kb on - strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.909 kb on + strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.917 kb on - strandat 608.942 kb on + strandat 608.974 kb on + strandat 608.975 kb on + strandat 609.006 kb on - strandat 609.084 kb on + strandat 609.108 kb on + strandat 609.108 kb on + strandat 609.108 kb on + strandat 609.262 kb on + strandat 609.515 kb on - strand, within Dshi_0617at 609.573 kb on + strand, within Dshi_0617at 609.581 kb on - strand, within Dshi_0617at 609.609 kb on + strand, within Dshi_0617at 609.628 kb on - strand, within Dshi_0617at 609.666 kb on + strand, within Dshi_0617at 609.674 kb on - strand, within Dshi_0617at 609.684 kb on - strand, within Dshi_0617at 609.694 kb on + strand, within Dshi_0617

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
607,290 + Dshi_0614 0.42 +0.0
607,322 + Dshi_0614 0.54 +0.9
607,325 + Dshi_0614 0.55 +0.1
607,424 - -0.2
607,633 + Dshi_0615 0.23 -1.1
607,635 + Dshi_0615 0.23 -1.2
607,739 + Dshi_0615 0.38 -1.8
607,786 - Dshi_0615 0.45 -3.4
607,786 - Dshi_0615 0.45 -3.1
607,827 - Dshi_0615 0.51 -3.2
607,884 + Dshi_0615 0.59 -3.2
607,929 + Dshi_0615 0.65 -0.9
607,929 + Dshi_0615 0.65 -3.4
607,929 + Dshi_0615 0.65 -4.0
608,039 - Dshi_0615 0.81 -2.4
608,055 + Dshi_0615 0.83 -3.0
608,106 + -2.0
608,106 + -2.6
608,114 - -3.2
608,199 - -0.9
608,199 - -1.4
608,222 - -2.0
608,234 + +0.4
608,234 + +0.2
608,247 + -1.1
608,353 + Dshi_0616 0.17 -0.2
608,370 - Dshi_0616 0.21 -0.5
608,370 - Dshi_0616 0.21 -2.2
608,407 + Dshi_0616 0.30 -1.4
608,443 + Dshi_0616 0.38 -1.9
608,443 + Dshi_0616 0.38 -0.7
608,443 + Dshi_0616 0.38 -0.3
608,443 + Dshi_0616 0.38 -0.6
608,443 + Dshi_0616 0.38 -0.7
608,451 + Dshi_0616 0.40 -0.4
608,480 - Dshi_0616 0.47 +0.1
608,489 + Dshi_0616 0.50 +0.4
608,589 + Dshi_0616 0.74 +0.2
608,589 + Dshi_0616 0.74 -0.4
608,604 + Dshi_0616 0.77 -0.3
608,617 - Dshi_0616 0.80 -0.3
608,636 - Dshi_0616 0.85 -0.9
608,761 + -0.1
608,823 - -0.5
608,880 - +1.7
608,909 + -0.5
608,909 + +0.1
608,909 + -0.4
608,909 + -0.5
608,909 + +0.1
608,909 + +0.1
608,917 - +0.1
608,917 - -2.2
608,917 - -1.4
608,917 - -0.0
608,917 - -0.4
608,917 - +0.3
608,942 + -0.8
608,974 + -0.3
608,975 + +0.4
609,006 - -1.6
609,084 + -0.4
609,108 + -0.9
609,108 + -0.2
609,108 + -0.3
609,262 + -0.2
609,515 - Dshi_0617 0.17 -0.2
609,573 + Dshi_0617 0.19 -0.7
609,581 - Dshi_0617 0.20 +0.5
609,609 + Dshi_0617 0.21 -0.4
609,628 - Dshi_0617 0.21 +0.7
609,666 + Dshi_0617 0.23 -0.5
609,674 - Dshi_0617 0.23 -0.5
609,684 - Dshi_0617 0.23 +0.3
609,694 + Dshi_0617 0.24 +1.1

Or see this region's nucleotide sequence