Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0585

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0584 and Dshi_0585 overlap by 23 nucleotidesDshi_0585 and Dshi_0586 are separated by 184 nucleotides Dshi_0584: Dshi_0584 - lipopolysaccharide biosynthesis protein (RefSeq), at 574,921 to 576,630 _0584 Dshi_0585: Dshi_0585 - ABC transporter related (RefSeq), at 576,608 to 577,267 _0585 Dshi_0586: Dshi_0586 - permease (RefSeq), at 577,452 to 578,498 _0586 Position (kb) 576 577 578Strain fitness (log2 ratio) -2 -1 0 1 2at 575.634 kb on - strand, within Dshi_0584at 575.718 kb on - strand, within Dshi_0584at 575.740 kb on - strand, within Dshi_0584at 575.752 kb on + strand, within Dshi_0584at 575.795 kb on + strand, within Dshi_0584at 575.876 kb on + strand, within Dshi_0584at 575.876 kb on + strand, within Dshi_0584at 575.935 kb on - strand, within Dshi_0584at 575.947 kb on + strand, within Dshi_0584at 575.994 kb on - strand, within Dshi_0584at 576.000 kb on + strand, within Dshi_0584at 576.057 kb on + strand, within Dshi_0584at 576.065 kb on - strand, within Dshi_0584at 576.087 kb on + strand, within Dshi_0584at 576.095 kb on - strand, within Dshi_0584at 576.095 kb on - strand, within Dshi_0584at 576.109 kb on - strand, within Dshi_0584at 576.204 kb on + strand, within Dshi_0584at 576.258 kb on + strand, within Dshi_0584at 576.286 kb on + strand, within Dshi_0584at 576.303 kb on + strand, within Dshi_0584at 576.338 kb on - strand, within Dshi_0584at 576.382 kb on + strand, within Dshi_0584at 576.382 kb on + strand, within Dshi_0584at 576.382 kb on + strand, within Dshi_0584at 576.390 kb on - strand, within Dshi_0584at 576.390 kb on - strand, within Dshi_0584at 576.446 kb on + strand, within Dshi_0584at 576.574 kb on - strandat 576.619 kb on - strandat 576.634 kb on + strandat 576.655 kb on + strandat 576.736 kb on + strand, within Dshi_0585at 576.811 kb on - strand, within Dshi_0585at 576.815 kb on + strand, within Dshi_0585at 576.878 kb on + strand, within Dshi_0585at 576.950 kb on + strand, within Dshi_0585at 577.016 kb on + strand, within Dshi_0585at 577.018 kb on + strand, within Dshi_0585at 577.018 kb on + strand, within Dshi_0585at 577.025 kb on - strand, within Dshi_0585at 577.027 kb on - strand, within Dshi_0585at 577.119 kb on + strand, within Dshi_0585at 577.175 kb on + strand, within Dshi_0585at 577.175 kb on + strand, within Dshi_0585at 577.183 kb on - strand, within Dshi_0585at 577.210 kb on - strandat 577.275 kb on + strandat 577.277 kb on + strandat 577.277 kb on + strandat 577.283 kb on - strandat 577.285 kb on - strandat 577.285 kb on - strandat 577.326 kb on + strandat 577.374 kb on + strandat 577.374 kb on + strandat 577.374 kb on + strandat 577.384 kb on + strandat 577.385 kb on + strandat 577.393 kb on - strandat 577.393 kb on - strandat 577.398 kb on + strandat 577.403 kb on + strandat 577.411 kb on - strandat 577.413 kb on + strandat 577.413 kb on + strandat 577.413 kb on + strandat 577.421 kb on - strandat 577.421 kb on - strandat 577.439 kb on - strandat 577.543 kb on + strandat 577.558 kb on - strand, within Dshi_0586at 577.596 kb on + strand, within Dshi_0586at 577.615 kb on + strand, within Dshi_0586at 577.615 kb on + strand, within Dshi_0586at 577.623 kb on - strand, within Dshi_0586at 577.644 kb on + strand, within Dshi_0586at 577.672 kb on - strand, within Dshi_0586at 577.677 kb on - strand, within Dshi_0586at 577.709 kb on + strand, within Dshi_0586at 577.717 kb on - strand, within Dshi_0586at 577.717 kb on - strand, within Dshi_0586at 577.717 kb on - strand, within Dshi_0586at 577.784 kb on - strand, within Dshi_0586at 577.796 kb on - strand, within Dshi_0586at 577.869 kb on + strand, within Dshi_0586at 577.875 kb on + strand, within Dshi_0586at 577.969 kb on - strand, within Dshi_0586at 577.974 kb on - strand, within Dshi_0586at 577.974 kb on - strand, within Dshi_0586at 578.001 kb on - strand, within Dshi_0586at 578.073 kb on + strand, within Dshi_0586at 578.224 kb on - strand, within Dshi_0586at 578.256 kb on - strand, within Dshi_0586

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
575,634 - Dshi_0584 0.42 -0.7
575,718 - Dshi_0584 0.47 +2.3
575,740 - Dshi_0584 0.48 -0.1
575,752 + Dshi_0584 0.49 -0.9
575,795 + Dshi_0584 0.51 -0.3
575,876 + Dshi_0584 0.56 -0.2
575,876 + Dshi_0584 0.56 +0.0
575,935 - Dshi_0584 0.59 -1.3
575,947 + Dshi_0584 0.60 +0.1
575,994 - Dshi_0584 0.63 +0.9
576,000 + Dshi_0584 0.63 +0.3
576,057 + Dshi_0584 0.66 -0.7
576,065 - Dshi_0584 0.67 +1.0
576,087 + Dshi_0584 0.68 -0.5
576,095 - Dshi_0584 0.69 -1.2
576,095 - Dshi_0584 0.69 -1.0
576,109 - Dshi_0584 0.69 -0.6
576,204 + Dshi_0584 0.75 -0.8
576,258 + Dshi_0584 0.78 -1.0
576,286 + Dshi_0584 0.80 -0.5
576,303 + Dshi_0584 0.81 -0.3
576,338 - Dshi_0584 0.83 -0.6
576,382 + Dshi_0584 0.85 -1.4
576,382 + Dshi_0584 0.85 +0.0
576,382 + Dshi_0584 0.85 +0.6
576,390 - Dshi_0584 0.86 +0.1
576,390 - Dshi_0584 0.86 -0.1
576,446 + Dshi_0584 0.89 -0.2
576,574 - -0.2
576,619 - -0.1
576,634 + -0.6
576,655 + -0.3
576,736 + Dshi_0585 0.19 +0.8
576,811 - Dshi_0585 0.31 -1.4
576,815 + Dshi_0585 0.31 +0.6
576,878 + Dshi_0585 0.41 +0.9
576,950 + Dshi_0585 0.52 +0.4
577,016 + Dshi_0585 0.62 -0.1
577,018 + Dshi_0585 0.62 +0.7
577,018 + Dshi_0585 0.62 +0.9
577,025 - Dshi_0585 0.63 -0.3
577,027 - Dshi_0585 0.63 +0.6
577,119 + Dshi_0585 0.77 -1.8
577,175 + Dshi_0585 0.86 -0.5
577,175 + Dshi_0585 0.86 +2.0
577,183 - Dshi_0585 0.87 -0.4
577,210 - -0.6
577,275 + +0.2
577,277 + +0.3
577,277 + +0.0
577,283 - +0.1
577,285 - +0.7
577,285 - -0.2
577,326 + -0.2
577,374 + +0.1
577,374 + -1.2
577,374 + -0.8
577,384 + +1.1
577,385 + +0.5
577,393 - -1.1
577,393 - -0.9
577,398 + +0.0
577,403 + -0.2
577,411 - -0.5
577,413 + +0.8
577,413 + +0.1
577,413 + +0.5
577,421 - -0.8
577,421 - +0.5
577,439 - -0.5
577,543 + -0.3
577,558 - Dshi_0586 0.10 -1.6
577,596 + Dshi_0586 0.14 +0.2
577,615 + Dshi_0586 0.16 +0.2
577,615 + Dshi_0586 0.16 -0.2
577,623 - Dshi_0586 0.16 +0.5
577,644 + Dshi_0586 0.18 -0.6
577,672 - Dshi_0586 0.21 -0.4
577,677 - Dshi_0586 0.21 -1.8
577,709 + Dshi_0586 0.25 -0.0
577,717 - Dshi_0586 0.25 -0.6
577,717 - Dshi_0586 0.25 -0.1
577,717 - Dshi_0586 0.25 -0.2
577,784 - Dshi_0586 0.32 -0.0
577,796 - Dshi_0586 0.33 -0.7
577,869 + Dshi_0586 0.40 +1.4
577,875 + Dshi_0586 0.40 -0.1
577,969 - Dshi_0586 0.49 -2.5
577,974 - Dshi_0586 0.50 +0.1
577,974 - Dshi_0586 0.50 +0.1
578,001 - Dshi_0586 0.52 -0.9
578,073 + Dshi_0586 0.59 +0.0
578,224 - Dshi_0586 0.74 +0.5
578,256 - Dshi_0586 0.77 -0.1

Or see this region's nucleotide sequence