Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0509

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0508 and Dshi_0509 are separated by 93 nucleotidesDshi_0509 and Dshi_0510 are separated by 181 nucleotides Dshi_0508: Dshi_0508 - cytochrome c class I (RefSeq), at 493,317 to 494,531 _0508 Dshi_0509: Dshi_0509 - hypothetical protein (RefSeq), at 494,625 to 495,407 _0509 Dshi_0510: Dshi_0510 - conserved hypothetical beta-lactamase (RefSeq), at 495,589 to 496,662 _0510 Position (kb) 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 493.720 kb on + strand, within Dshi_0508at 493.787 kb on - strand, within Dshi_0508at 493.800 kb on + strand, within Dshi_0508at 493.831 kb on + strand, within Dshi_0508at 493.893 kb on + strand, within Dshi_0508at 493.901 kb on - strand, within Dshi_0508at 493.965 kb on + strand, within Dshi_0508at 494.022 kb on + strand, within Dshi_0508at 494.058 kb on - strand, within Dshi_0508at 494.067 kb on - strand, within Dshi_0508at 494.103 kb on - strand, within Dshi_0508at 494.197 kb on - strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.266 kb on + strand, within Dshi_0508at 494.280 kb on - strand, within Dshi_0508at 494.302 kb on + strand, within Dshi_0508at 494.302 kb on + strand, within Dshi_0508at 494.310 kb on - strand, within Dshi_0508at 494.370 kb on + strand, within Dshi_0508at 494.378 kb on - strand, within Dshi_0508at 494.425 kb on - strandat 494.436 kb on - strandat 494.458 kb on + strandat 494.468 kb on - strandat 494.559 kb on + strandat 494.559 kb on + strandat 494.577 kb on - strandat 494.623 kb on + strandat 494.655 kb on + strandat 494.697 kb on - strandat 494.742 kb on + strand, within Dshi_0509at 494.793 kb on + strand, within Dshi_0509at 494.866 kb on - strand, within Dshi_0509at 494.926 kb on + strand, within Dshi_0509at 494.948 kb on + strand, within Dshi_0509at 495.121 kb on - strand, within Dshi_0509at 495.131 kb on - strand, within Dshi_0509at 495.154 kb on - strand, within Dshi_0509at 495.156 kb on + strand, within Dshi_0509at 495.166 kb on - strand, within Dshi_0509at 495.203 kb on + strand, within Dshi_0509at 495.211 kb on - strand, within Dshi_0509at 495.213 kb on + strand, within Dshi_0509at 495.216 kb on + strand, within Dshi_0509at 495.218 kb on + strand, within Dshi_0509at 495.309 kb on + strand, within Dshi_0509at 495.391 kb on + strandat 495.526 kb on - strandat 495.625 kb on - strandat 495.638 kb on + strandat 495.657 kb on - strandat 495.667 kb on - strandat 495.684 kb on - strandat 495.701 kb on + strand, within Dshi_0510at 495.722 kb on - strand, within Dshi_0510at 495.722 kb on - strand, within Dshi_0510at 495.722 kb on - strand, within Dshi_0510at 495.881 kb on - strand, within Dshi_0510at 495.935 kb on - strand, within Dshi_0510at 496.038 kb on - strand, within Dshi_0510at 496.043 kb on - strand, within Dshi_0510at 496.047 kb on - strand, within Dshi_0510at 496.106 kb on - strand, within Dshi_0510at 496.110 kb on + strand, within Dshi_0510at 496.118 kb on - strand, within Dshi_0510at 496.151 kb on - strand, within Dshi_0510at 496.151 kb on - strand, within Dshi_0510at 496.202 kb on + strand, within Dshi_0510at 496.223 kb on + strand, within Dshi_0510at 496.231 kb on - strand, within Dshi_0510at 496.235 kb on - strand, within Dshi_0510at 496.242 kb on - strand, within Dshi_0510at 496.336 kb on - strand, within Dshi_0510at 496.370 kb on - strand, within Dshi_0510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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493,720 + Dshi_0508 0.33 -0.4
493,787 - Dshi_0508 0.39 -2.8
493,800 + Dshi_0508 0.40 +0.5
493,831 + Dshi_0508 0.42 -0.8
493,893 + Dshi_0508 0.47 -0.5
493,901 - Dshi_0508 0.48 -0.5
493,965 + Dshi_0508 0.53 +0.1
494,022 + Dshi_0508 0.58 -1.2
494,058 - Dshi_0508 0.61 -0.6
494,067 - Dshi_0508 0.62 -1.4
494,103 - Dshi_0508 0.65 +0.2
494,197 - Dshi_0508 0.72 +0.6
494,236 + Dshi_0508 0.76 -0.8
494,236 + Dshi_0508 0.76 -1.2
494,236 + Dshi_0508 0.76 +0.3
494,266 + Dshi_0508 0.78 -0.7
494,280 - Dshi_0508 0.79 -1.1
494,302 + Dshi_0508 0.81 -0.0
494,302 + Dshi_0508 0.81 +0.7
494,310 - Dshi_0508 0.82 +1.1
494,370 + Dshi_0508 0.87 -0.4
494,378 - Dshi_0508 0.87 +0.4
494,425 - -0.7
494,436 - +0.3
494,458 + -0.0
494,468 - -0.3
494,559 + -0.9
494,559 + +0.5
494,577 - -0.3
494,623 + -2.0
494,655 + -1.8
494,697 - -0.2
494,742 + Dshi_0509 0.15 +0.8
494,793 + Dshi_0509 0.21 -0.5
494,866 - Dshi_0509 0.31 +0.5
494,926 + Dshi_0509 0.38 +1.9
494,948 + Dshi_0509 0.41 -0.6
495,121 - Dshi_0509 0.63 -0.4
495,131 - Dshi_0509 0.65 +0.7
495,154 - Dshi_0509 0.68 +1.9
495,156 + Dshi_0509 0.68 -0.1
495,166 - Dshi_0509 0.69 +0.6
495,203 + Dshi_0509 0.74 -0.1
495,211 - Dshi_0509 0.75 +1.4
495,213 + Dshi_0509 0.75 -0.3
495,216 + Dshi_0509 0.75 +1.4
495,218 + Dshi_0509 0.76 +1.5
495,309 + Dshi_0509 0.87 -0.4
495,391 + -0.8
495,526 - +0.9
495,625 - -0.2
495,638 + -0.5
495,657 - +1.0
495,667 - -1.0
495,684 - -1.4
495,701 + Dshi_0510 0.10 -1.2
495,722 - Dshi_0510 0.12 +0.5
495,722 - Dshi_0510 0.12 +0.5
495,722 - Dshi_0510 0.12 +0.6
495,881 - Dshi_0510 0.27 -0.8
495,935 - Dshi_0510 0.32 -1.3
496,038 - Dshi_0510 0.42 +0.3
496,043 - Dshi_0510 0.42 -0.3
496,047 - Dshi_0510 0.43 -0.7
496,106 - Dshi_0510 0.48 +0.1
496,110 + Dshi_0510 0.49 +0.4
496,118 - Dshi_0510 0.49 +0.6
496,151 - Dshi_0510 0.52 +1.5
496,151 - Dshi_0510 0.52 -1.2
496,202 + Dshi_0510 0.57 +1.5
496,223 + Dshi_0510 0.59 -0.3
496,231 - Dshi_0510 0.60 -0.1
496,235 - Dshi_0510 0.60 -0.8
496,242 - Dshi_0510 0.61 -1.7
496,336 - Dshi_0510 0.70 +0.3
496,370 - Dshi_0510 0.73 -0.6

Or see this region's nucleotide sequence