Strain Fitness in Shewanella oneidensis MR-1 around SO2666

Experiment: Uridine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine (C)
2,795,276	-		SO2663	0.52	-0.9
2,795,331	-		SO2663	0.61	+0.3
2,795,333	-		SO2663	0.62	+0.2
2,795,364	-		SO2663	0.67	-0.0
2,795,364	-		SO2663	0.67	+0.1
2,795,366	+		SO2663	0.67	-0.6
2,795,374	-		SO2663	0.69	+0.6
2,795,398	+		SO2663	0.73	-1.8
2,795,424	+		SO2663	0.78	-1.4
2,795,432	-		SO2663	0.79	-0.9
2,795,432	-		SO2663	0.79	+0.2
2,795,432	-		SO2663	0.79	-0.7
2,795,434	+		SO2663	0.79	-0.2
2,795,434	+		SO2663	0.79	-3.6
2,795,434	+		SO2663	0.79	-1.2
2,795,449	-		SO2663	0.82	+0.6
2,795,531	+				-1.0
2,795,534	-				-0.2
2,795,539	-				-0.5
2,795,574	-				-1.3
2,795,654	+				-0.1
2,795,662	-				-0.4
2,795,662	-				-0.5
2,795,706	-		SO2664	0.24	+0.1
2,795,783	+		SO2664	0.50	-2.8
2,795,783	+		SO2664	0.50	-0.7
2,795,783	+		SO2664	0.50	-0.1
2,795,783	+		SO2664	0.50	-0.3
2,795,783	+		SO2664	0.50	-0.4
2,795,783	+		SO2664	0.50	-2.0
2,795,783	+		SO2664	0.50	-0.7
2,795,791	-		SO2664	0.53	+0.8
2,795,791	-		SO2664	0.53	+0.9
2,795,791	-		SO2664	0.53	+0.3
2,795,799	+		SO2664	0.56	-1.4
2,795,812	+		SO2664	0.60	+0.3
2,795,992	+		SO2665	0.11	+0.1
2,796,054	-		SO2665	0.35	+0.8
2,796,054	-		SO2665	0.35	+0.2
2,796,054	-		SO2665	0.35	+0.3
2,796,104	+		SO2665	0.54	-1.3
2,796,112	-		SO2665	0.57	+1.0
2,796,197	-				+0.4
2,796,216	+				-0.5
2,796,216	+				-2.4
2,796,216	+				-0.7
2,796,279	-				+0.2
2,796,282	-				-0.9
2,796,336	-		SO2666	0.19	+1.8
2,796,346	-		SO2666	0.20	+0.3
2,796,351	-		SO2666	0.21	+0.9
2,796,375	+		SO2666	0.25	-1.4
2,796,442	-		SO2666	0.37	+1.8
2,796,442	-		SO2666	0.37	+0.3
2,796,442	-		SO2666	0.37	-0.2
2,796,467	+		SO2666	0.42	-1.1
2,796,587	+		SO2666	0.63	-1.2
2,796,595	-		SO2666	0.64	+0.3
2,796,622	+		SO2666	0.69	+0.3
2,796,622	+		SO2666	0.69	-0.7
2,796,624	+		SO2666	0.69	+0.7
2,796,630	-		SO2666	0.70	-0.6
2,796,630	-		SO2666	0.70	-0.4
2,796,630	-		SO2666	0.70	+0.8
2,796,630	-		SO2666	0.70	+0.0
2,796,665	+		SO2666	0.77	-1.1
2,796,665	+		SO2666	0.77	-1.7
2,796,666	-		SO2666	0.77	-0.1
2,796,705	+		SO2666	0.84	-0.0
2,796,705	+		SO2666	0.84	+0.5
2,796,741	-				+0.2
2,796,745	+				+0.5
2,796,750	+				+0.3
2,796,758	-				-0.9
2,796,758	-				+0.9
2,796,759	+				+1.1
2,796,815	+				+1.6
2,796,816	+				-0.1
2,796,816	+				-0.0
2,796,816	+				+0.8
2,796,816	+				-0.6
2,796,816	+				-0.2
2,796,816	+				+1.4
2,796,816	+				+1.2
2,796,816	+				+0.1
2,796,816	+				-0.7
2,796,816	+				-0.1
2,796,816	+				+0.4
2,796,816	+				-0.1
2,796,824	-				-0.9
2,796,824	-				-0.5
2,796,824	-				-0.3
2,796,824	-				+0.0
2,796,824	-				-0.0
2,796,826	+				+0.1
2,796,896	+		SO2667	0.17	+0.6
2,796,931	+		SO2667	0.23	+1.2
2,796,951	+		SO2667	0.27	-0.6
2,796,951	+		SO2667	0.27	-0.3
2,796,951	+		SO2667	0.27	+0.2
2,796,951	+		SO2667	0.27	+0.0
2,796,966	+		SO2667	0.30	-0.9
2,796,974	+		SO2667	0.31	+0.4
2,797,139	+		SO2667	0.62	+0.8
2,797,147	-		SO2667	0.64	+0.0
2,797,159	+		SO2667	0.66	-0.6
2,797,159	+		SO2667	0.66	-0.6
2,797,164	+		SO2667	0.67	-0.1
2,797,164	+		SO2667	0.67	-0.2
2,797,172	-		SO2667	0.69	-0.0
2,797,194	+		SO2667	0.73	+1.7
2,797,194	+		SO2667	0.73	+0.3
2,797,194	+		SO2667	0.73	+0.1
2,797,202	-		SO2667	0.74	+0.8
2,797,202	-		SO2667	0.74	+0.2
2,797,202	-		SO2667	0.74	+0.8
2,797,202	-		SO2667	0.74	-0.0
2,797,202	-		SO2667	0.74	+0.5
2,797,202	-		SO2667	0.74	-1.1
2,797,209	-		SO2667	0.75	+0.1
2,797,303	+				-1.6
2,797,304	+				+0.6
2,797,316	-				+0.0
2,797,358	+				-0.3
2,797,363	+				+0.2
2,797,370	-				+0.2
2,797,449	+				-0.2
2,797,449	+				+0.0
2,797,449	+				+1.2
2,797,449	+				+2.3
2,797,457	-				+0.7
2,797,457	-				+1.3
2,797,457	-				-0.2
2,797,457	-				+0.3
2,797,488	+				+0.4
2,797,496	-				+0.6
2,797,507	+				-0.4
2,797,507	+				+0.4
2,797,507	+				+0.2
2,797,507	+				-0.4
2,797,515	-				+0.6
2,797,549	-				-0.5
2,797,614	-				+0.6
2,797,620	+				+0.3
2,797,622	+				+0.2
2,797,628	-				+0.0
2,797,635	+				-0.5
2,797,690	+				+0.4
2,797,707	+				+0.9
2,797,712	+				-0.4
2,797,712	+				+0.3
2,797,712	+				+1.0
2,797,712	+				+0.1
2,797,712	+				+0.1
2,797,720	-				+0.1
2,797,720	-				-0.1
2,797,720	-				+0.4
2,797,720	-				-1.0
2,797,720	-				+0.7
2,797,720	-				+0.4
2,797,722	+				+0.0
2,797,729	+				-0.2
2,797,729	+				+0.6
2,797,729	+				+0.0
2,797,729	+				+0.5
2,797,729	+				+0.2
2,797,729	+				+0.4
2,797,729	+				+0.2
2,797,729	+				+0.4
2,797,729	+				+0.7
2,797,729	+				+1.2
2,797,729	+				+0.4
2,797,729	+				+1.0
2,797,729	+				+1.1
2,797,729	+				-0.2
2,797,729	+				+0.8
2,797,729	+				-0.1
2,797,737	-				+0.9
2,797,737	-				+0.9
2,797,737	-				+1.1
2,797,737	-				+0.5
2,797,737	-				+0.7
2,797,737	-				-0.0
2,797,737	-				+0.4
2,797,737	-				+1.1
2,797,737	-				+0.2
2,797,737	-				+0.2
2,797,737	-				+0.4
2,797,737	-				-0.5
2,797,737	-				+1.1
2,797,737	-				+1.2
2,797,783	-		SO2668	0.19	+0.1