Strain Fitness in Shewanella oneidensis MR-1 around SO1199

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfolP and glmM are separated by 73 nucleotidesglmM and tpiA are separated by 193 nucleotidestpiA and secG are separated by 1 nucleotides SO1198: folP - dihydropteroate synthase (NCBI ptt file), at 1,241,974 to 1,242,807 folP SO1199: glmM - phosphoglucosamine mutase (NCBI ptt file), at 1,242,881 to 1,244,218 glmM SO1200: tpiA - triosephosphate isomerase (NCBI ptt file), at 1,244,412 to 1,245,194 tpiA SO1201: secG - preprotein translocase, SecG subunit (NCBI ptt file), at 1,245,196 to 1,245,531 secG Position (kb) 1242 1243 1244 1245Strain fitness (log2 ratio) -1 0 1at 1241.954 kb on + strandat 1242.850 kb on + strandat 1242.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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1,241,954 + +0.8
1,242,850 + +0.9
1,242,852 + -1.4

Or see this region's nucleotide sequence