Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0945 and SO0946 overlap by 1 nucleotides SO0946 and srmB are separated by 633 nucleotides
SO0945: SO0945 - AcrB/AcrD/AcrF family protein (NCBI ptt file), at 977,233 to 980,436
SO0945
SO0946: SO0946 - conserved hypothetical protein (NCBI ptt file), at 980,436 to 981,563
SO0946
SO0947: srmB - ATP-dependent RNA helicase SrmB (NCBI ptt file), at 982,197 to 983,459
srmB
Position (kb) 980
981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 979.460 kb on - strand, within SO0945 at 979.473 kb on + strand, within SO0945 at 979.473 kb on + strand, within SO0945 at 979.473 kb on + strand, within SO0945 at 979.540 kb on - strand, within SO0945 at 979.624 kb on + strand, within SO0945 at 979.626 kb on - strand, within SO0945 at 979.626 kb on - strand, within SO0945 at 979.849 kb on - strand, within SO0945 at 979.875 kb on + strand, within SO0945 at 979.902 kb on + strand, within SO0945 at 979.904 kb on + strand, within SO0945 at 979.912 kb on - strand, within SO0945 at 980.074 kb on + strand, within SO0945 at 980.116 kb on + strand at 980.124 kb on - strand at 980.124 kb on - strand at 980.124 kb on - strand at 980.150 kb on - strand at 980.160 kb on - strand at 980.259 kb on + strand at 980.261 kb on - strand at 980.264 kb on + strand at 980.264 kb on + strand at 980.264 kb on + strand at 980.278 kb on - strand at 980.320 kb on - strand at 980.329 kb on + strand at 980.329 kb on + strand at 980.339 kb on + strand at 980.339 kb on + strand at 980.356 kb on + strand at 980.356 kb on + strand at 980.390 kb on + strand at 980.395 kb on + strand at 980.510 kb on - strand at 980.570 kb on + strand, within SO0946 at 980.580 kb on + strand, within SO0946 at 980.641 kb on + strand, within SO0946 at 980.681 kb on + strand, within SO0946 at 980.689 kb on - strand, within SO0946 at 980.714 kb on - strand, within SO0946 at 980.824 kb on + strand, within SO0946 at 980.906 kb on + strand, within SO0946 at 980.914 kb on - strand, within SO0946 at 980.950 kb on - strand, within SO0946 at 980.960 kb on - strand, within SO0946 at 981.025 kb on - strand, within SO0946 at 981.075 kb on + strand, within SO0946 at 981.123 kb on + strand, within SO0946 at 981.198 kb on + strand, within SO0946 at 981.206 kb on - strand, within SO0946 at 981.212 kb on - strand, within SO0946 at 981.271 kb on + strand, within SO0946 at 981.276 kb on + strand, within SO0946 at 981.284 kb on - strand, within SO0946 at 981.406 kb on - strand, within SO0946 at 981.533 kb on - strand at 981.636 kb on - strand at 981.652 kb on - strand at 981.816 kb on - strand at 982.278 kb on - strand at 982.345 kb on - strand, within srmB at 982.359 kb on - strand, within srmB at 982.364 kb on + strand, within srmB at 982.369 kb on + strand, within srmB at 982.372 kb on - strand, within srmB at 982.555 kb on + strand, within srmB
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 979,460 - SO0945 0.70 -0.1 979,473 + SO0945 0.70 -0.6 979,473 + SO0945 0.70 -0.1 979,473 + SO0945 0.70 +0.8 979,540 - SO0945 0.72 +0.4 979,624 + SO0945 0.75 +0.1 979,626 - SO0945 0.75 -0.4 979,626 - SO0945 0.75 +0.4 979,849 - SO0945 0.82 -0.2 979,875 + SO0945 0.82 +0.1 979,902 + SO0945 0.83 +0.1 979,904 + SO0945 0.83 -1.8 979,912 - SO0945 0.84 +0.1 980,074 + SO0945 0.89 -0.1 980,116 + -1.1 980,124 - -0.1 980,124 - +0.1 980,124 - -0.6 980,150 - +1.6 980,160 - -1.3 980,259 + +0.1 980,261 - +0.6 980,264 + +0.1 980,264 + +1.6 980,264 + +1.5 980,278 - +0.2 980,320 - +0.9 980,329 + -0.0 980,329 + +0.2 980,339 + +1.9 980,339 + +0.3 980,356 + +0.8 980,356 + -0.2 980,390 + +0.5 980,395 + +0.1 980,510 - -0.2 980,570 + SO0946 0.12 +0.1 980,580 + SO0946 0.13 +0.5 980,641 + SO0946 0.18 -0.5 980,681 + SO0946 0.22 -1.2 980,689 - SO0946 0.22 -0.3 980,714 - SO0946 0.25 -0.3 980,824 + SO0946 0.34 -0.2 980,906 + SO0946 0.42 -0.1 980,914 - SO0946 0.42 -0.1 980,950 - SO0946 0.46 +0.4 980,960 - SO0946 0.46 -0.5 981,025 - SO0946 0.52 +0.7 981,075 + SO0946 0.57 -2.5 981,123 + SO0946 0.61 -0.2 981,198 + SO0946 0.68 -0.8 981,206 - SO0946 0.68 +0.4 981,212 - SO0946 0.69 -0.5 981,271 + SO0946 0.74 -0.3 981,276 + SO0946 0.74 +0.1 981,284 - SO0946 0.75 -1.0 981,406 - SO0946 0.86 +0.6 981,533 - +0.1 981,636 - +0.1 981,652 - -0.2 981,816 - -0.7 982,278 - +0.5 982,345 - srmB SO0947 0.12 -1.4 982,359 - srmB SO0947 0.13 +0.9 982,364 + srmB SO0947 0.13 +0.8 982,369 + srmB SO0947 0.14 +1.4 982,372 - srmB SO0947 0.14 +1.7 982,555 + srmB SO0947 0.28 +2.0
Or see this region's nucleotide sequence