Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0564 and SO0565 are separated by 10 nucleotides SO0565 and SO0566 are separated by 4 nucleotides SO0566 and plsC are separated by 182 nucleotides plsC and SO0568 are separated by 43 nucleotides
SO0564: SO0564 - conserved hypothetical protein (NCBI ptt file), at 585,522 to 586,511
SO0564
SO0565: SO0565 - adhesion protein, putative (NCBI ptt file), at 586,522 to 587,403
SO0565
SO0566: SO0566 - ABC 3 transport family protein (NCBI ptt file), at 587,408 to 588,187
SO0566
SO0567: plsC - 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI ptt file), at 588,370 to 589,113
plsC
SO0568: SO0568 - conserved hypothetical protein (NCBI ptt file), at 589,157 to 589,561
SO0568
Position (kb) 587
588
589 Strain fitness (log2 ratio) -1
0
1
2 at 586.542 kb on - strand at 586.579 kb on + strand at 586.579 kb on + strand at 586.678 kb on + strand, within SO0565 at 586.686 kb on - strand, within SO0565 at 586.687 kb on + strand, within SO0565 at 586.847 kb on - strand, within SO0565 at 586.932 kb on + strand, within SO0565 at 586.953 kb on - strand, within SO0565 at 586.958 kb on - strand, within SO0565 at 586.983 kb on + strand, within SO0565 at 587.067 kb on - strand, within SO0565 at 587.104 kb on - strand, within SO0565 at 587.305 kb on + strand, within SO0565 at 587.330 kb on + strand at 587.364 kb on + strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.576 kb on + strand, within SO0566 at 587.797 kb on - strand, within SO0566 at 587.816 kb on + strand, within SO0566 at 587.822 kb on + strand, within SO0566 at 587.926 kb on - strand, within SO0566 at 588.005 kb on + strand, within SO0566 at 588.027 kb on - strand, within SO0566 at 588.141 kb on + strand at 588.154 kb on - strand at 588.165 kb on + strand at 588.165 kb on + strand at 588.173 kb on - strand at 588.176 kb on + strand at 588.394 kb on - strand at 588.394 kb on - strand at 588.472 kb on + strand, within plsC at 588.540 kb on + strand, within plsC at 588.612 kb on + strand, within plsC at 588.620 kb on - strand, within plsC at 588.620 kb on - strand, within plsC at 588.625 kb on + strand, within plsC at 588.679 kb on + strand, within plsC at 588.976 kb on - strand, within plsC
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 586,542 - +0.8 586,579 + -0.1 586,579 + -0.2 586,678 + SO0565 0.18 +0.3 586,686 - SO0565 0.19 -0.2 586,687 + SO0565 0.19 -0.8 586,847 - SO0565 0.37 +1.2 586,932 + SO0565 0.46 +0.7 586,953 - SO0565 0.49 +0.3 586,958 - SO0565 0.49 -0.4 586,983 + SO0565 0.52 +0.4 587,067 - SO0565 0.62 -0.2 587,104 - SO0565 0.66 +0.2 587,305 + SO0565 0.89 +0.1 587,330 + -0.5 587,364 + -1.1 587,370 - -0.1 587,370 - -0.4 587,370 - +0.3 587,370 - +1.9 587,576 + SO0566 0.22 +0.4 587,797 - SO0566 0.50 +1.8 587,816 + SO0566 0.52 +0.5 587,822 + SO0566 0.53 +0.8 587,926 - SO0566 0.66 +0.4 588,005 + SO0566 0.77 -0.5 588,027 - SO0566 0.79 +0.1 588,141 + -0.3 588,154 - +0.3 588,165 + +0.1 588,165 + +0.2 588,173 - -0.5 588,176 + +0.1 588,394 - +0.6 588,394 - -0.2 588,472 + plsC SO0567 0.14 +0.4 588,540 + plsC SO0567 0.23 -0.3 588,612 + plsC SO0567 0.33 +0.4 588,620 - plsC SO0567 0.34 -0.4 588,620 - plsC SO0567 0.34 +1.0 588,625 + plsC SO0567 0.34 -0.5 588,679 + plsC SO0567 0.42 -0.8 588,976 - plsC SO0567 0.81 +1.0
Or see this region's nucleotide sequence