Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfD and nosL are separated by 119 nucleotides nosL and nosD are separated by 10 nucleotides
SO0484: nrfD - formate-dependent nitrite reductase, nrfD protein (NCBI ptt file), at 507,756 to 508,691
nrfD
SO0485: nosL - nosL protein (NCBI ptt file), at 508,811 to 509,302
nosL
SO0486: nosD - copper ABC transporter, periplasmic copper-binding protein (NCBI ptt file), at 509,313 to 510,587
nosD
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1
2 at 507.838 kb on - strand at 507.843 kb on + strand at 507.851 kb on - strand, within nrfD at 507.963 kb on - strand, within nrfD at 508.083 kb on + strand, within nrfD at 508.196 kb on + strand, within nrfD at 508.249 kb on - strand, within nrfD at 508.256 kb on + strand, within nrfD at 508.316 kb on - strand, within nrfD at 508.353 kb on + strand, within nrfD at 508.353 kb on + strand, within nrfD at 508.361 kb on - strand, within nrfD at 508.387 kb on + strand, within nrfD at 508.387 kb on + strand, within nrfD at 508.387 kb on + strand, within nrfD at 508.387 kb on + strand, within nrfD at 508.443 kb on + strand, within nrfD at 508.490 kb on + strand, within nrfD at 508.490 kb on + strand, within nrfD at 508.602 kb on + strand at 508.622 kb on + strand at 508.637 kb on - strand at 508.645 kb on + strand at 508.645 kb on - strand at 508.653 kb on - strand at 508.661 kb on - strand at 508.696 kb on + strand at 508.743 kb on + strand at 508.769 kb on - strand at 508.928 kb on - strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.978 kb on + strand, within nosL at 508.986 kb on - strand, within nosL at 508.986 kb on - strand, within nosL at 508.986 kb on - strand, within nosL at 508.986 kb on - strand, within nosL at 508.986 kb on - strand, within nosL at 508.986 kb on - strand, within nosL at 508.986 kb on - strand, within nosL at 509.024 kb on + strand, within nosL at 509.251 kb on + strand, within nosL at 509.252 kb on + strand, within nosL at 509.252 kb on + strand, within nosL at 509.252 kb on + strand, within nosL at 509.252 kb on + strand, within nosL at 509.260 kb on - strand at 509.260 kb on - strand at 509.260 kb on - strand at 509.267 kb on - strand at 509.274 kb on + strand at 509.382 kb on - strand at 509.420 kb on + strand at 509.589 kb on - strand, within nosD at 509.650 kb on + strand, within nosD at 509.655 kb on - strand, within nosD at 509.820 kb on - strand, within nosD at 509.869 kb on - strand, within nosD at 509.871 kb on + strand, within nosD at 509.925 kb on + strand, within nosD at 509.945 kb on + strand, within nosD at 509.994 kb on - strand, within nosD at 510.077 kb on + strand, within nosD at 510.103 kb on + strand, within nosD at 510.127 kb on + strand, within nosD at 510.127 kb on - strand, within nosD at 510.127 kb on - strand, within nosD at 510.179 kb on + strand, within nosD at 510.212 kb on + strand, within nosD at 510.234 kb on + strand, within nosD at 510.291 kb on - strand, within nosD
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 507,838 - -0.6 507,843 + +0.6 507,851 - nrfD SO0484 0.10 +0.5 507,963 - nrfD SO0484 0.22 -0.7 508,083 + nrfD SO0484 0.35 +0.3 508,196 + nrfD SO0484 0.47 +0.1 508,249 - nrfD SO0484 0.53 -0.8 508,256 + nrfD SO0484 0.53 +0.1 508,316 - nrfD SO0484 0.60 -0.2 508,353 + nrfD SO0484 0.64 -0.0 508,353 + nrfD SO0484 0.64 -0.1 508,361 - nrfD SO0484 0.65 +0.2 508,387 + nrfD SO0484 0.67 +0.2 508,387 + nrfD SO0484 0.67 +0.4 508,387 + nrfD SO0484 0.67 -0.5 508,387 + nrfD SO0484 0.67 -0.4 508,443 + nrfD SO0484 0.73 -0.3 508,490 + nrfD SO0484 0.78 -0.3 508,490 + nrfD SO0484 0.78 -0.3 508,602 + -0.6 508,622 + -0.1 508,637 - +0.7 508,645 + -0.1 508,645 - +0.4 508,653 - +0.3 508,661 - -1.7 508,696 + -0.0 508,743 + +0.3 508,769 - +2.5 508,928 - nosL SO0485 0.24 +0.2 508,978 + nosL SO0485 0.34 +0.1 508,978 + nosL SO0485 0.34 -0.0 508,978 + nosL SO0485 0.34 +0.8 508,978 + nosL SO0485 0.34 -0.7 508,978 + nosL SO0485 0.34 +1.7 508,978 + nosL SO0485 0.34 -0.5 508,978 + nosL SO0485 0.34 +0.4 508,978 + nosL SO0485 0.34 -0.3 508,978 + nosL SO0485 0.34 +0.7 508,986 - nosL SO0485 0.36 +0.4 508,986 - nosL SO0485 0.36 +0.6 508,986 - nosL SO0485 0.36 +0.8 508,986 - nosL SO0485 0.36 -0.1 508,986 - nosL SO0485 0.36 +0.7 508,986 - nosL SO0485 0.36 +1.3 508,986 - nosL SO0485 0.36 +0.3 509,024 + nosL SO0485 0.43 -0.5 509,251 + nosL SO0485 0.89 -0.1 509,252 + nosL SO0485 0.90 +0.7 509,252 + nosL SO0485 0.90 +0.1 509,252 + nosL SO0485 0.90 +0.5 509,252 + nosL SO0485 0.90 +0.9 509,260 - -0.3 509,260 - -1.0 509,260 - -0.1 509,267 - -0.2 509,274 + -0.7 509,382 - +0.4 509,420 + +2.3 509,589 - nosD SO0486 0.22 +0.2 509,650 + nosD SO0486 0.26 +0.6 509,655 - nosD SO0486 0.27 -0.1 509,820 - nosD SO0486 0.40 +1.3 509,869 - nosD SO0486 0.44 -0.1 509,871 + nosD SO0486 0.44 -0.7 509,925 + nosD SO0486 0.48 -0.6 509,945 + nosD SO0486 0.50 -0.2 509,994 - nosD SO0486 0.53 -0.4 510,077 + nosD SO0486 0.60 -0.5 510,103 + nosD SO0486 0.62 -0.2 510,127 + nosD SO0486 0.64 +1.3 510,127 - nosD SO0486 0.64 +0.3 510,127 - nosD SO0486 0.64 -2.1 510,179 + nosD SO0486 0.68 -0.2 510,212 + nosD SO0486 0.71 -0.5 510,234 + nosD SO0486 0.72 -0.3 510,291 - nosD SO0486 0.77 -1.3
Or see this region's nucleotide sequence