Strain Fitness in Shewanella oneidensis MR-1 around SO_0893

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0891 and SO0892 are separated by 59 nucleotidesSO0892 and SO_0893 overlap by 65 nucleotidesSO_0893 and SO0894 are separated by 413 nucleotides SO0891: SO0891 - ISSod1, transposase OrfA (NCBI ptt file), at 920,229 to 920,519 SO0891 SO0892: SO0892 - ISSod1, transposase OrfB (NCBI ptt file), at 920,579 to 921,388 SO0892 SO_0893: SO_0893 - no description, at 921,324 to 922,547 _0893 SO0894: SO0894 - hypothetical protein (NCBI ptt file), at 922,961 to 923,062 SO0894 Position (kb) 921 922 923Strain fitness (log2 ratio) -2 -1 0 1at 921.382 kb on + strandat 921.387 kb on + strandat 922.814 kb on - strandat 922.814 kb on - strandat 922.840 kb on - strandat 922.850 kb on - strandat 922.860 kb on - strandat 922.860 kb on - strandat 922.874 kb on + strandat 923.069 kb on + strandat 923.069 kb on + strandat 923.072 kb on - strandat 923.077 kb on - strandat 923.206 kb on - strandat 923.214 kb on - strandat 923.247 kb on + strandat 923.277 kb on + strandat 923.277 kb on + strandat 923.285 kb on - strandat 923.285 kb on - strandat 923.287 kb on + strandat 923.290 kb on + strandat 923.292 kb on + strandat 923.303 kb on - strandat 923.315 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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921,382 + -0.1
921,387 + +0.8
922,814 - +0.8
922,814 - +0.3
922,840 - +0.8
922,850 - -1.2
922,860 - +1.1
922,860 - -0.1
922,874 + +0.0
923,069 + +0.8
923,069 + +0.3
923,072 - +0.1
923,077 - +0.2
923,206 - -0.1
923,214 - -0.1
923,247 + -0.4
923,277 + -0.0
923,277 + -0.4
923,285 - -0.7
923,285 - -0.4
923,287 + +0.1
923,290 + +0.3
923,292 + +0.6
923,303 - -1.9
923,315 + +0.0

Or see this region's nucleotide sequence