Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07780 and PGA1_c07790 are separated by 23 nucleotides PGA1_c07790 and PGA1_c07800 are separated by 128 nucleotides PGA1_c07800 and PGA1_c07810 are separated by 232 nucleotides
PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256
_c07780
PGA1_c07790: PGA1_c07790 - hypothetical protein, at 806,280 to 806,465
_c07790
PGA1_c07800: PGA1_c07800 - putative transcriptional regulator, lacI family, at 806,594 to 807,619
_c07800
PGA1_c07810: PGA1_c07810 - aminotransferase class-III, at 807,852 to 809,225
_c07810
Position (kb) 806
807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 805.685 kb on + strand, within PGA1_c07780 at 805.726 kb on + strand, within PGA1_c07780 at 805.726 kb on + strand, within PGA1_c07780 at 805.734 kb on - strand, within PGA1_c07780 at 805.762 kb on - strand, within PGA1_c07780 at 805.767 kb on + strand, within PGA1_c07780 at 805.767 kb on + strand, within PGA1_c07780 at 805.812 kb on + strand, within PGA1_c07780 at 805.820 kb on - strand, within PGA1_c07780 at 805.825 kb on + strand, within PGA1_c07780 at 805.835 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.858 kb on + strand, within PGA1_c07780 at 805.903 kb on - strand, within PGA1_c07780 at 805.904 kb on - strand, within PGA1_c07780 at 805.907 kb on - strand, within PGA1_c07780 at 805.950 kb on - strand, within PGA1_c07780 at 806.047 kb on + strand, within PGA1_c07780 at 806.047 kb on + strand, within PGA1_c07780 at 806.053 kb on - strand, within PGA1_c07780 at 806.055 kb on + strand at 806.063 kb on - strand, within PGA1_c07780 at 806.070 kb on + strand, within PGA1_c07780 at 806.101 kb on - strand, within PGA1_c07780 at 806.136 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.143 kb on + strand at 806.144 kb on - strand at 806.153 kb on + strand at 806.167 kb on + strand at 806.172 kb on + strand at 806.172 kb on + strand at 806.180 kb on - strand at 806.425 kb on - strand, within PGA1_c07790 at 806.447 kb on - strand at 806.449 kb on + strand at 806.479 kb on - strand at 806.586 kb on + strand at 806.638 kb on + strand at 806.638 kb on - strand at 806.658 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.787 kb on + strand, within PGA1_c07800 at 806.818 kb on + strand, within PGA1_c07800 at 806.841 kb on + strand, within PGA1_c07800 at 806.841 kb on + strand, within PGA1_c07800 at 806.851 kb on - strand, within PGA1_c07800 at 806.851 kb on - strand, within PGA1_c07800 at 806.877 kb on + strand, within PGA1_c07800 at 806.877 kb on + strand, within PGA1_c07800 at 806.901 kb on - strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.932 kb on + strand, within PGA1_c07800 at 806.935 kb on - strand, within PGA1_c07800 at 806.960 kb on + strand, within PGA1_c07800 at 806.982 kb on - strand, within PGA1_c07800 at 807.032 kb on - strand, within PGA1_c07800 at 807.081 kb on - strand, within PGA1_c07800 at 807.264 kb on + strand, within PGA1_c07800 at 807.305 kb on - strand, within PGA1_c07800 at 807.322 kb on + strand, within PGA1_c07800 at 807.388 kb on - strand, within PGA1_c07800 at 807.434 kb on - strand, within PGA1_c07800 at 807.551 kb on - strand at 807.568 kb on - strand at 807.568 kb on - strand at 807.570 kb on + strand at 807.686 kb on + strand at 807.694 kb on - strand at 807.732 kb on + strand at 807.740 kb on - strand at 807.740 kb on - strand at 807.771 kb on + strand at 807.773 kb on + strand at 807.800 kb on + strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.842 kb on - strand at 807.891 kb on + strand at 807.904 kb on + strand at 807.976 kb on + strand at 808.038 kb on - strand, within PGA1_c07810 at 808.041 kb on + strand, within PGA1_c07810 at 808.049 kb on - strand, within PGA1_c07810 at 808.049 kb on - strand, within PGA1_c07810 at 808.049 kb on - strand, within PGA1_c07810 at 808.077 kb on + strand, within PGA1_c07810 at 808.116 kb on + strand, within PGA1_c07810 at 808.116 kb on + strand, within PGA1_c07810 at 808.123 kb on + strand, within PGA1_c07810 at 808.131 kb on - strand, within PGA1_c07810 at 808.131 kb on - strand, within PGA1_c07810 at 808.133 kb on + strand, within PGA1_c07810 at 808.135 kb on + strand, within PGA1_c07810 at 808.142 kb on - strand, within PGA1_c07810 at 808.170 kb on + strand, within PGA1_c07810 at 808.189 kb on - strand, within PGA1_c07810 at 808.212 kb on + strand, within PGA1_c07810 at 808.246 kb on - strand, within PGA1_c07810 at 808.305 kb on - strand, within PGA1_c07810 at 808.312 kb on + strand, within PGA1_c07810 at 808.312 kb on + strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.325 kb on - strand, within PGA1_c07810 at 808.342 kb on + strand, within PGA1_c07810 at 808.350 kb on - strand, within PGA1_c07810 at 808.396 kb on - strand, within PGA1_c07810 at 808.420 kb on + strand, within PGA1_c07810 at 808.420 kb on + strand, within PGA1_c07810 at 808.441 kb on + strand, within PGA1_c07810 at 808.458 kb on - strand, within PGA1_c07810 at 808.507 kb on - strand, within PGA1_c07810 at 808.515 kb on + strand, within PGA1_c07810 at 808.533 kb on + strand, within PGA1_c07810 at 808.543 kb on + strand, within PGA1_c07810
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 805,685 + PGA1_c07780 0.50 +2.4 805,726 + PGA1_c07780 0.54 -1.2 805,726 + PGA1_c07780 0.54 -0.9 805,734 - PGA1_c07780 0.54 -1.9 805,762 - PGA1_c07780 0.57 +1.9 805,767 + PGA1_c07780 0.57 +0.1 805,767 + PGA1_c07780 0.57 -0.6 805,812 + PGA1_c07780 0.61 -0.3 805,820 - PGA1_c07780 0.62 -1.6 805,825 + PGA1_c07780 0.62 +0.5 805,835 + PGA1_c07780 0.63 +0.2 805,845 + PGA1_c07780 0.64 +0.3 805,845 + PGA1_c07780 0.64 -2.9 805,845 + PGA1_c07780 0.64 +1.1 805,845 + PGA1_c07780 0.64 +0.8 805,845 + PGA1_c07780 0.64 -0.3 805,845 + PGA1_c07780 0.64 -0.2 805,845 + PGA1_c07780 0.64 +1.2 805,853 - PGA1_c07780 0.65 +0.5 805,853 - PGA1_c07780 0.65 -0.2 805,853 - PGA1_c07780 0.65 -0.5 805,853 - PGA1_c07780 0.65 +0.3 805,858 + PGA1_c07780 0.65 +0.6 805,903 - PGA1_c07780 0.69 -0.9 805,904 - PGA1_c07780 0.69 +0.4 805,907 - PGA1_c07780 0.69 -2.6 805,950 - PGA1_c07780 0.73 -0.1 806,047 + PGA1_c07780 0.82 +0.0 806,047 + PGA1_c07780 0.82 -0.1 806,053 - PGA1_c07780 0.82 -0.1 806,055 + +0.9 806,063 - PGA1_c07780 0.83 +0.1 806,070 + PGA1_c07780 0.84 -1.6 806,101 - PGA1_c07780 0.86 -0.1 806,136 + PGA1_c07780 0.89 -0.9 806,141 + PGA1_c07780 0.90 +0.5 806,141 + PGA1_c07780 0.90 +0.9 806,141 + PGA1_c07780 0.90 -1.2 806,143 + -0.1 806,144 - -1.1 806,153 + -1.7 806,167 + +0.9 806,172 + +0.7 806,172 + +0.9 806,180 - +0.1 806,425 - PGA1_c07790 0.78 -0.4 806,447 - -1.1 806,449 + -2.1 806,479 - -0.1 806,586 + +0.4 806,638 + -0.4 806,638 - -0.4 806,658 + +0.2 806,663 + +1.2 806,663 + -1.3 806,663 + +2.4 806,663 + -0.5 806,787 + PGA1_c07800 0.19 -0.2 806,818 + PGA1_c07800 0.22 -1.6 806,841 + PGA1_c07800 0.24 -1.6 806,841 + PGA1_c07800 0.24 -0.5 806,851 - PGA1_c07800 0.25 +0.5 806,851 - PGA1_c07800 0.25 -2.2 806,877 + PGA1_c07800 0.28 -1.6 806,877 + PGA1_c07800 0.28 -0.1 806,901 - PGA1_c07800 0.30 -0.1 806,910 + PGA1_c07800 0.31 +0.2 806,910 + PGA1_c07800 0.31 -0.9 806,910 + PGA1_c07800 0.31 -2.4 806,910 + PGA1_c07800 0.31 +0.2 806,910 + PGA1_c07800 0.31 +0.2 806,918 - PGA1_c07800 0.32 -0.4 806,918 - PGA1_c07800 0.32 -0.6 806,918 - PGA1_c07800 0.32 -1.3 806,927 + PGA1_c07800 0.32 -0.7 806,927 + PGA1_c07800 0.32 +0.9 806,927 + PGA1_c07800 0.32 -0.5 806,932 + PGA1_c07800 0.33 +1.4 806,935 - PGA1_c07800 0.33 +0.3 806,960 + PGA1_c07800 0.36 -0.6 806,982 - PGA1_c07800 0.38 -0.6 807,032 - PGA1_c07800 0.43 -0.8 807,081 - PGA1_c07800 0.47 -0.6 807,264 + PGA1_c07800 0.65 +0.8 807,305 - PGA1_c07800 0.69 -0.4 807,322 + PGA1_c07800 0.71 -2.1 807,388 - PGA1_c07800 0.77 -1.2 807,434 - PGA1_c07800 0.82 -0.3 807,551 - -1.2 807,568 - -0.1 807,568 - +0.4 807,570 + -0.5 807,686 + -0.3 807,694 - +0.5 807,732 + +0.6 807,740 - -0.2 807,740 - +0.9 807,771 + +0.5 807,773 + -0.2 807,800 + -1.1 807,808 - +0.7 807,808 - +0.6 807,808 - -0.2 807,808 - -1.5 807,808 - -2.1 807,808 - -1.2 807,834 + -0.6 807,834 + +0.3 807,834 + +0.3 807,834 + -0.3 807,834 + -2.4 807,834 + -1.6 807,842 - -0.0 807,891 + +0.2 807,904 + -0.0 807,976 + +1.3 808,038 - PGA1_c07810 0.14 -1.4 808,041 + PGA1_c07810 0.14 -0.3 808,049 - PGA1_c07810 0.14 -1.0 808,049 - PGA1_c07810 0.14 +0.1 808,049 - PGA1_c07810 0.14 +0.3 808,077 + PGA1_c07810 0.16 -1.7 808,116 + PGA1_c07810 0.19 -1.9 808,116 + PGA1_c07810 0.19 +0.4 808,123 + PGA1_c07810 0.20 +1.0 808,131 - PGA1_c07810 0.20 +1.3 808,131 - PGA1_c07810 0.20 -0.6 808,133 + PGA1_c07810 0.20 -2.6 808,135 + PGA1_c07810 0.21 +0.9 808,142 - PGA1_c07810 0.21 -0.5 808,170 + PGA1_c07810 0.23 +0.4 808,189 - PGA1_c07810 0.25 +0.2 808,212 + PGA1_c07810 0.26 -2.6 808,246 - PGA1_c07810 0.29 +0.4 808,305 - PGA1_c07810 0.33 -1.4 808,312 + PGA1_c07810 0.33 -1.0 808,312 + PGA1_c07810 0.33 +0.5 808,320 - PGA1_c07810 0.34 +0.1 808,320 - PGA1_c07810 0.34 +0.1 808,320 - PGA1_c07810 0.34 -1.0 808,320 - PGA1_c07810 0.34 +0.3 808,325 - PGA1_c07810 0.34 +0.5 808,342 + PGA1_c07810 0.36 +0.4 808,350 - PGA1_c07810 0.36 +1.0 808,396 - PGA1_c07810 0.40 -1.0 808,420 + PGA1_c07810 0.41 +1.8 808,420 + PGA1_c07810 0.41 -0.2 808,441 + PGA1_c07810 0.43 -0.9 808,458 - PGA1_c07810 0.44 +0.4 808,507 - PGA1_c07810 0.48 +0.4 808,515 + PGA1_c07810 0.48 +0.4 808,533 + PGA1_c07810 0.50 -0.0 808,543 + PGA1_c07810 0.50 -1.8
Or see this region's nucleotide sequence