Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00760 and PGA1_c00770 are separated by 158 nucleotides PGA1_c00770 and PGA1_c00780 are separated by 123 nucleotides PGA1_c00780 and PGA1_c00790 are separated by 58 nucleotides PGA1_c00790 and PGA1_c00800 are separated by 63 nucleotides
PGA1_c00760: PGA1_c00760 - putative pyruvate dehydrogenase complex repressor, at 73,699 to 74,469
_c00760
PGA1_c00770: PGA1_c00770 - hypothetical protein, at 74,628 to 74,966
_c00770
PGA1_c00780: PGA1_c00780 - putative chromosome segregation protein SMC, at 75,090 to 78,545
_c00780
PGA1_c00790: PGA1_c00790 - hypothetical protein, at 78,604 to 79,071
_c00790
PGA1_c00800: PGA1_c00800 - hypothetical protein, at 79,135 to 79,524
_c00800
Position (kb) 75
76
77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.231 kb on + strand, within PGA1_c00760 at 74.246 kb on - strand, within PGA1_c00760 at 74.346 kb on + strand, within PGA1_c00760 at 74.363 kb on + strand, within PGA1_c00760 at 74.364 kb on - strand, within PGA1_c00760 at 74.381 kb on + strand, within PGA1_c00760 at 74.381 kb on + strand, within PGA1_c00760 at 74.381 kb on + strand, within PGA1_c00760 at 74.389 kb on - strand, within PGA1_c00760 at 74.400 kb on + strand at 74.424 kb on + strand at 74.424 kb on + strand at 74.432 kb on - strand at 74.432 kb on - strand at 74.437 kb on + strand at 74.448 kb on + strand at 74.473 kb on - strand at 74.473 kb on - strand at 74.504 kb on - strand at 74.525 kb on - strand at 74.525 kb on - strand at 74.535 kb on + strand at 74.536 kb on - strand at 74.536 kb on - strand at 74.536 kb on - strand at 74.573 kb on + strand at 74.586 kb on - strand at 74.619 kb on + strand at 74.619 kb on + strand at 74.619 kb on + strand at 74.622 kb on + strand at 74.622 kb on - strand at 74.627 kb on - strand at 74.628 kb on - strand at 74.628 kb on - strand at 74.628 kb on - strand at 74.629 kb on + strand at 74.647 kb on - strand at 74.660 kb on - strand at 74.696 kb on - strand, within PGA1_c00770 at 74.710 kb on + strand, within PGA1_c00770 at 74.754 kb on + strand, within PGA1_c00770 at 74.754 kb on - strand, within PGA1_c00770 at 74.762 kb on - strand, within PGA1_c00770 at 74.764 kb on - strand, within PGA1_c00770 at 74.775 kb on - strand, within PGA1_c00770 at 74.801 kb on + strand, within PGA1_c00770 at 74.834 kb on + strand, within PGA1_c00770 at 74.892 kb on - strand, within PGA1_c00770 at 74.892 kb on - strand, within PGA1_c00770 at 74.901 kb on + strand, within PGA1_c00770 at 74.901 kb on + strand, within PGA1_c00770 at 74.909 kb on - strand, within PGA1_c00770 at 74.909 kb on - strand, within PGA1_c00770 at 74.948 kb on + strand at 75.001 kb on - strand at 75.012 kb on + strand at 75.200 kb on + strand at 75.224 kb on - strand at 75.307 kb on - strand at 75.333 kb on - strand at 75.404 kb on - strand at 75.445 kb on + strand, within PGA1_c00780 at 75.445 kb on + strand, within PGA1_c00780 at 75.513 kb on + strand, within PGA1_c00780 at 75.822 kb on - strand, within PGA1_c00780 at 75.829 kb on - strand, within PGA1_c00780 at 75.847 kb on - strand, within PGA1_c00780 at 75.878 kb on - strand, within PGA1_c00780 at 75.981 kb on + strand, within PGA1_c00780 at 76.066 kb on - strand, within PGA1_c00780 at 76.126 kb on + strand, within PGA1_c00780 at 76.126 kb on + strand, within PGA1_c00780 at 76.126 kb on + strand, within PGA1_c00780 at 76.134 kb on - strand, within PGA1_c00780 at 76.153 kb on - strand, within PGA1_c00780 at 76.155 kb on + strand, within PGA1_c00780 at 76.293 kb on - strand, within PGA1_c00780 at 76.303 kb on - strand, within PGA1_c00780 at 76.303 kb on - strand, within PGA1_c00780 at 76.309 kb on - strand, within PGA1_c00780 at 76.388 kb on + strand, within PGA1_c00780 at 76.394 kb on + strand, within PGA1_c00780 at 76.542 kb on - strand, within PGA1_c00780 at 76.626 kb on + strand, within PGA1_c00780 at 76.680 kb on - strand, within PGA1_c00780 at 76.691 kb on + strand, within PGA1_c00780 at 76.800 kb on - strand, within PGA1_c00780 at 76.888 kb on + strand, within PGA1_c00780 at 76.899 kb on + strand, within PGA1_c00780 at 76.909 kb on + strand, within PGA1_c00780 at 76.917 kb on - strand, within PGA1_c00780 at 76.959 kb on - strand, within PGA1_c00780 at 77.054 kb on + strand, within PGA1_c00780 at 77.054 kb on + strand, within PGA1_c00780 at 77.054 kb on + strand, within PGA1_c00780 at 77.062 kb on - strand, within PGA1_c00780 at 77.104 kb on - strand, within PGA1_c00780 at 77.208 kb on - strand, within PGA1_c00780 at 77.426 kb on + strand, within PGA1_c00780 at 77.428 kb on + strand, within PGA1_c00780 at 77.434 kb on - strand, within PGA1_c00780 at 77.434 kb on - strand, within PGA1_c00780 at 77.483 kb on + strand, within PGA1_c00780 at 77.491 kb on - strand, within PGA1_c00780 at 77.559 kb on + strand, within PGA1_c00780 at 77.559 kb on + strand, within PGA1_c00780 at 77.567 kb on - strand, within PGA1_c00780 at 77.603 kb on - strand, within PGA1_c00780 at 77.635 kb on - strand, within PGA1_c00780 at 77.635 kb on - strand, within PGA1_c00780 at 77.641 kb on + strand, within PGA1_c00780 at 77.678 kb on - strand, within PGA1_c00780 at 77.751 kb on - strand, within PGA1_c00780 at 77.751 kb on - strand, within PGA1_c00780 at 77.775 kb on + strand, within PGA1_c00780 at 77.808 kb on + strand, within PGA1_c00780 at 77.813 kb on + strand, within PGA1_c00780 at 77.816 kb on - strand, within PGA1_c00780 at 77.816 kb on - strand, within PGA1_c00780 at 77.840 kb on - strand, within PGA1_c00780 at 77.850 kb on - strand, within PGA1_c00780 at 77.856 kb on + strand, within PGA1_c00780 at 77.864 kb on - strand, within PGA1_c00780 at 77.902 kb on - strand, within PGA1_c00780 at 77.940 kb on - strand, within PGA1_c00780 at 78.074 kb on + strand, within PGA1_c00780 at 78.085 kb on + strand, within PGA1_c00780 at 78.093 kb on - strand, within PGA1_c00780 at 78.109 kb on + strand, within PGA1_c00780 at 78.151 kb on + strand, within PGA1_c00780 at 78.276 kb on + strand at 78.284 kb on - strand at 78.309 kb on + strand at 78.506 kb on - strand at 78.541 kb on + strand at 78.568 kb on + strand at 78.637 kb on - strand at 78.642 kb on - strand at 78.653 kb on + strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.678 kb on + strand, within PGA1_c00790 at 78.740 kb on + strand, within PGA1_c00790 at 78.772 kb on + strand, within PGA1_c00790 at 78.803 kb on + strand, within PGA1_c00790 at 78.804 kb on + strand, within PGA1_c00790 at 78.811 kb on - strand, within PGA1_c00790 at 78.859 kb on - strand, within PGA1_c00790 at 78.935 kb on - strand, within PGA1_c00790 at 79.037 kb on - strand at 79.065 kb on + strand at 79.075 kb on + strand at 79.075 kb on + strand at 79.075 kb on + strand at 79.083 kb on - strand at 79.083 kb on - strand at 79.133 kb on + strand at 79.186 kb on + strand, within PGA1_c00800 at 79.209 kb on + strand, within PGA1_c00800 at 79.227 kb on - strand, within PGA1_c00800 at 79.244 kb on - strand, within PGA1_c00800 at 79.308 kb on + strand, within PGA1_c00800 at 79.366 kb on + strand, within PGA1_c00800 at 79.374 kb on - strand, within PGA1_c00800 at 79.374 kb on - strand, within PGA1_c00800 at 79.382 kb on - strand, within PGA1_c00800 at 79.428 kb on + strand, within PGA1_c00800 at 79.458 kb on + strand, within PGA1_c00800 at 79.518 kb on + strand at 79.526 kb on - strand at 79.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 74,231 + PGA1_c00760 0.69 +0.2 74,246 - PGA1_c00760 0.71 +0.1 74,346 + PGA1_c00760 0.84 -2.3 74,363 + PGA1_c00760 0.86 -0.1 74,364 - PGA1_c00760 0.86 +1.0 74,381 + PGA1_c00760 0.88 -0.6 74,381 + PGA1_c00760 0.88 -0.8 74,381 + PGA1_c00760 0.88 +0.1 74,389 - PGA1_c00760 0.89 +1.3 74,400 + -0.4 74,424 + -1.3 74,424 + -0.2 74,432 - +1.2 74,432 - +1.7 74,437 + -0.0 74,448 + -0.8 74,473 - +1.3 74,473 - +1.3 74,504 - +0.0 74,525 - -0.8 74,525 - -1.7 74,535 + +0.1 74,536 - -0.9 74,536 - -0.3 74,536 - +0.6 74,573 + -0.0 74,586 - -0.7 74,619 + -0.7 74,619 + +0.6 74,619 + -1.5 74,622 + +0.4 74,622 - +0.0 74,627 - +0.9 74,628 - -0.1 74,628 - +1.1 74,628 - +0.3 74,629 + -2.7 74,647 - +0.5 74,660 - -0.1 74,696 - PGA1_c00770 0.20 +1.8 74,710 + PGA1_c00770 0.24 +0.5 74,754 + PGA1_c00770 0.37 +0.0 74,754 - PGA1_c00770 0.37 +0.0 74,762 - PGA1_c00770 0.40 -0.5 74,764 - PGA1_c00770 0.40 -0.9 74,775 - PGA1_c00770 0.43 -2.4 74,801 + PGA1_c00770 0.51 -1.4 74,834 + PGA1_c00770 0.61 +0.9 74,892 - PGA1_c00770 0.78 +0.6 74,892 - PGA1_c00770 0.78 -1.0 74,901 + PGA1_c00770 0.81 +0.2 74,901 + PGA1_c00770 0.81 -0.2 74,909 - PGA1_c00770 0.83 -0.9 74,909 - PGA1_c00770 0.83 +1.4 74,948 + +0.4 75,001 - -1.8 75,012 + -0.8 75,200 + +0.4 75,224 - -1.6 75,307 - -1.2 75,333 - +0.5 75,404 - -0.8 75,445 + PGA1_c00780 0.10 -1.7 75,445 + PGA1_c00780 0.10 -1.2 75,513 + PGA1_c00780 0.12 -0.3 75,822 - PGA1_c00780 0.21 -2.7 75,829 - PGA1_c00780 0.21 -1.0 75,847 - PGA1_c00780 0.22 +0.8 75,878 - PGA1_c00780 0.23 -0.1 75,981 + PGA1_c00780 0.26 -0.3 76,066 - PGA1_c00780 0.28 +0.5 76,126 + PGA1_c00780 0.30 -1.0 76,126 + PGA1_c00780 0.30 -0.8 76,126 + PGA1_c00780 0.30 -2.5 76,134 - PGA1_c00780 0.30 -1.9 76,153 - PGA1_c00780 0.31 -0.0 76,155 + PGA1_c00780 0.31 +0.4 76,293 - PGA1_c00780 0.35 -1.8 76,303 - PGA1_c00780 0.35 -0.7 76,303 - PGA1_c00780 0.35 -0.2 76,309 - PGA1_c00780 0.35 +0.6 76,388 + PGA1_c00780 0.38 -1.1 76,394 + PGA1_c00780 0.38 +1.4 76,542 - PGA1_c00780 0.42 +1.1 76,626 + PGA1_c00780 0.44 -1.2 76,680 - PGA1_c00780 0.46 -2.0 76,691 + PGA1_c00780 0.46 +1.4 76,800 - PGA1_c00780 0.49 -0.0 76,888 + PGA1_c00780 0.52 -1.4 76,899 + PGA1_c00780 0.52 -0.4 76,909 + PGA1_c00780 0.53 -0.2 76,917 - PGA1_c00780 0.53 -0.5 76,959 - PGA1_c00780 0.54 +0.9 77,054 + PGA1_c00780 0.57 +0.3 77,054 + PGA1_c00780 0.57 -1.9 77,054 + PGA1_c00780 0.57 -1.8 77,062 - PGA1_c00780 0.57 +1.5 77,104 - PGA1_c00780 0.58 -2.0 77,208 - PGA1_c00780 0.61 +0.3 77,426 + PGA1_c00780 0.68 +0.8 77,428 + PGA1_c00780 0.68 -2.6 77,434 - PGA1_c00780 0.68 -2.2 77,434 - PGA1_c00780 0.68 -0.5 77,483 + PGA1_c00780 0.69 -1.4 77,491 - PGA1_c00780 0.69 -0.9 77,559 + PGA1_c00780 0.71 -0.1 77,559 + PGA1_c00780 0.71 -2.9 77,567 - PGA1_c00780 0.72 +0.8 77,603 - PGA1_c00780 0.73 -0.0 77,635 - PGA1_c00780 0.74 -0.6 77,635 - PGA1_c00780 0.74 +0.5 77,641 + PGA1_c00780 0.74 -0.9 77,678 - PGA1_c00780 0.75 -0.3 77,751 - PGA1_c00780 0.77 -0.2 77,751 - PGA1_c00780 0.77 +0.2 77,775 + PGA1_c00780 0.78 -0.1 77,808 + PGA1_c00780 0.79 -3.0 77,813 + PGA1_c00780 0.79 -1.5 77,816 - PGA1_c00780 0.79 -1.0 77,816 - PGA1_c00780 0.79 -1.0 77,840 - PGA1_c00780 0.80 -1.0 77,850 - PGA1_c00780 0.80 -1.3 77,856 + PGA1_c00780 0.80 -2.5 77,864 - PGA1_c00780 0.80 +0.2 77,902 - PGA1_c00780 0.81 -0.2 77,940 - PGA1_c00780 0.82 -0.1 78,074 + PGA1_c00780 0.86 +1.1 78,085 + PGA1_c00780 0.87 +1.5 78,093 - PGA1_c00780 0.87 -0.0 78,109 + PGA1_c00780 0.87 -0.0 78,151 + PGA1_c00780 0.89 +0.1 78,276 + -0.6 78,284 - -0.2 78,309 + +1.1 78,506 - +0.8 78,541 + -0.8 78,568 + +1.2 78,637 - -1.2 78,642 - +0.2 78,653 + PGA1_c00790 0.10 +0.5 78,661 - PGA1_c00790 0.12 +0.4 78,661 - PGA1_c00790 0.12 +1.0 78,661 - PGA1_c00790 0.12 +1.1 78,678 + PGA1_c00790 0.16 +1.3 78,740 + PGA1_c00790 0.29 -1.2 78,772 + PGA1_c00790 0.36 +0.7 78,803 + PGA1_c00790 0.43 +0.6 78,804 + PGA1_c00790 0.43 -1.0 78,811 - PGA1_c00790 0.44 +0.4 78,859 - PGA1_c00790 0.54 -0.4 78,935 - PGA1_c00790 0.71 +0.2 79,037 - -0.6 79,065 + +0.4 79,075 + +0.3 79,075 + +0.5 79,075 + -0.5 79,083 - -1.9 79,083 - +0.7 79,133 + -0.3 79,186 + PGA1_c00800 0.13 +0.4 79,209 + PGA1_c00800 0.19 -0.6 79,227 - PGA1_c00800 0.24 -0.0 79,244 - PGA1_c00800 0.28 -1.5 79,308 + PGA1_c00800 0.44 +0.1 79,366 + PGA1_c00800 0.59 +0.2 79,374 - PGA1_c00800 0.61 -0.9 79,374 - PGA1_c00800 0.61 +0.6 79,382 - PGA1_c00800 0.63 -0.8 79,428 + PGA1_c00800 0.75 +1.1 79,458 + PGA1_c00800 0.83 +1.0 79,518 + +0.5 79,526 - -1.7 79,539 + +0.9
Or see this region's nucleotide sequence