Strain Fitness in Marinobacter adhaerens HP15 around HP15_68

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_66 and HP15_67 are separated by 333 nucleotidesHP15_67 and HP15_68 are separated by 215 nucleotides HP15_66: HP15_66 - adenylate cyclase, at 70,790 to 72,199 _66 HP15_67: HP15_67 - short-chain dehydrogenase/reductase SDR, at 72,533 to 72,934 _67 HP15_68: HP15_68 - sensory box/FOG: EAL domain/GGDEF domain containing protein, at 73,150 to 76,638 _68 Position (kb) 73 74 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.167 kb on + strandat 72.167 kb on + strandat 72.284 kb on + strandat 72.292 kb on - strandat 72.292 kb on - strandat 72.413 kb on + strandat 72.555 kb on - strandat 72.584 kb on - strand, within HP15_67at 72.598 kb on + strand, within HP15_67at 72.636 kb on - strand, within HP15_67at 72.636 kb on - strand, within HP15_67at 72.638 kb on + strand, within HP15_67at 72.643 kb on + strand, within HP15_67at 72.643 kb on + strand, within HP15_67at 72.649 kb on - strand, within HP15_67at 72.665 kb on + strand, within HP15_67at 72.673 kb on - strand, within HP15_67at 72.739 kb on + strand, within HP15_67at 73.065 kb on - strandat 73.084 kb on + strandat 73.107 kb on + strandat 73.115 kb on - strandat 73.156 kb on + strandat 73.306 kb on - strandat 73.331 kb on + strandat 73.339 kb on - strandat 73.396 kb on + strandat 73.414 kb on - strandat 73.444 kb on - strandat 73.496 kb on - strandat 73.511 kb on + strand, within HP15_68at 73.569 kb on + strand, within HP15_68at 73.577 kb on - strand, within HP15_68at 73.579 kb on + strand, within HP15_68at 73.579 kb on - strand, within HP15_68at 73.623 kb on + strand, within HP15_68at 73.648 kb on + strand, within HP15_68at 73.726 kb on - strand, within HP15_68at 73.761 kb on - strand, within HP15_68at 73.802 kb on + strand, within HP15_68at 73.832 kb on + strand, within HP15_68at 73.841 kb on - strand, within HP15_68at 73.874 kb on + strand, within HP15_68at 73.887 kb on - strand, within HP15_68at 73.906 kb on - strand, within HP15_68at 73.912 kb on - strand, within HP15_68at 73.924 kb on - strand, within HP15_68at 74.032 kb on + strand, within HP15_68at 74.040 kb on - strand, within HP15_68at 74.051 kb on + strand, within HP15_68at 74.056 kb on + strand, within HP15_68at 74.058 kb on + strand, within HP15_68at 74.063 kb on + strand, within HP15_68at 74.063 kb on + strand, within HP15_68at 74.068 kb on + strand, within HP15_68at 74.083 kb on - strand, within HP15_68at 74.119 kb on + strand, within HP15_68at 74.129 kb on + strand, within HP15_68at 74.132 kb on - strand, within HP15_68at 74.137 kb on - strand, within HP15_68at 74.260 kb on - strand, within HP15_68at 74.315 kb on - strand, within HP15_68at 74.320 kb on - strand, within HP15_68at 74.328 kb on - strand, within HP15_68at 74.378 kb on - strand, within HP15_68at 74.389 kb on + strand, within HP15_68at 74.392 kb on - strand, within HP15_68at 74.455 kb on + strand, within HP15_68at 74.485 kb on + strand, within HP15_68at 74.490 kb on + strand, within HP15_68at 74.513 kb on - strand, within HP15_68at 74.547 kb on + strand, within HP15_68at 74.550 kb on - strand, within HP15_68at 74.555 kb on - strand, within HP15_68at 74.559 kb on + strand, within HP15_68at 74.576 kb on + strand, within HP15_68at 74.584 kb on - strand, within HP15_68at 74.601 kb on + strand, within HP15_68at 74.669 kb on + strand, within HP15_68at 74.669 kb on + strand, within HP15_68at 74.766 kb on + strand, within HP15_68at 74.780 kb on - strand, within HP15_68at 74.807 kb on + strand, within HP15_68at 74.830 kb on + strand, within HP15_68at 74.831 kb on + strand, within HP15_68at 74.933 kb on + strand, within HP15_68at 74.936 kb on - strand, within HP15_68at 74.941 kb on - strand, within HP15_68at 74.956 kb on + strand, within HP15_68at 74.959 kb on - strand, within HP15_68at 74.966 kb on + strand, within HP15_68at 74.966 kb on + strand, within HP15_68at 75.099 kb on - strand, within HP15_68at 75.113 kb on - strand, within HP15_68at 75.146 kb on + strand, within HP15_68at 75.219 kb on - strand, within HP15_68at 75.233 kb on - strand, within HP15_68at 75.337 kb on + strand, within HP15_68at 75.406 kb on - strand, within HP15_68at 75.459 kb on + strand, within HP15_68at 75.487 kb on - strand, within HP15_68at 75.489 kb on - strand, within HP15_68at 75.489 kb on - strand, within HP15_68at 75.489 kb on - strand, within HP15_68at 75.534 kb on - strand, within HP15_68at 75.545 kb on + strand, within HP15_68at 75.564 kb on - strand, within HP15_68at 75.611 kb on + strand, within HP15_68at 75.611 kb on + strand, within HP15_68at 75.616 kb on + strand, within HP15_68at 75.654 kb on - strand, within HP15_68at 75.739 kb on - strand, within HP15_68at 75.739 kb on - strand, within HP15_68at 75.777 kb on + strand, within HP15_68at 75.777 kb on + strand, within HP15_68at 75.798 kb on - strand, within HP15_68at 75.829 kb on - strand, within HP15_68at 75.890 kb on - strand, within HP15_68at 75.890 kb on - strand, within HP15_68at 75.940 kb on + strand, within HP15_68at 75.940 kb on + strand, within HP15_68at 75.955 kb on - strand, within HP15_68at 75.989 kb on + strand, within HP15_68at 76.061 kb on + strand, within HP15_68at 76.081 kb on + strand, within HP15_68at 76.090 kb on - strand, within HP15_68at 76.115 kb on - strand, within HP15_68at 76.123 kb on + strand, within HP15_68at 76.123 kb on + strand, within HP15_68at 76.131 kb on - strand, within HP15_68at 76.131 kb on - strand, within HP15_68at 76.154 kb on - strand, within HP15_68at 76.272 kb on - strand, within HP15_68at 76.284 kb on + strand, within HP15_68at 76.298 kb on - strandat 76.298 kb on - strandat 76.432 kb on + strandat 76.434 kb on + strandat 76.442 kb on - strandat 76.442 kb on - strandat 76.450 kb on + strandat 76.486 kb on - strandat 76.511 kb on + strandat 76.551 kb on + strandat 76.559 kb on + strandat 76.566 kb on + strandat 76.566 kb on + strandat 76.688 kb on + strandat 76.696 kb on - strandat 76.728 kb on + strandat 76.752 kb on + strandat 76.762 kb on + strandat 76.861 kb on - strandat 76.861 kb on - strandat 76.888 kb on - strandat 76.905 kb on + strandat 76.907 kb on + strandat 76.913 kb on - strandat 76.923 kb on - strandat 76.955 kb on + strandat 77.001 kb on + strandat 77.009 kb on - strandat 77.015 kb on + strandat 77.054 kb on - strandat 77.089 kb on + strandat 77.089 kb on + strandat 77.089 kb on + strandat 77.089 kb on + strandat 77.092 kb on - strandat 77.097 kb on - strandat 77.183 kb on + strandat 77.331 kb on - strandat 77.353 kb on + strandat 77.378 kb on - strandat 77.379 kb on + strandat 77.478 kb on - strandat 77.565 kb on + strandat 77.594 kb on + strandat 77.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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72,167 + +0.7
72,167 + -3.6
72,284 + -0.5
72,292 - -0.3
72,292 - -0.7
72,413 + +0.7
72,555 - +1.0
72,584 - HP15_67 0.13 -1.2
72,598 + HP15_67 0.16 -0.1
72,636 - HP15_67 0.26 -0.1
72,636 - HP15_67 0.26 +0.3
72,638 + HP15_67 0.26 +0.1
72,643 + HP15_67 0.27 +0.0
72,643 + HP15_67 0.27 -0.4
72,649 - HP15_67 0.29 +0.4
72,665 + HP15_67 0.33 -1.3
72,673 - HP15_67 0.35 -0.6
72,739 + HP15_67 0.51 -1.9
73,065 - -0.5
73,084 + +0.0
73,107 + +0.0
73,115 - +0.0
73,156 + +0.8
73,306 - +0.1
73,331 + -1.3
73,339 - -1.0
73,396 + +0.5
73,414 - +0.7
73,444 - -0.5
73,496 - -1.3
73,511 + HP15_68 0.10 +0.1
73,569 + HP15_68 0.12 +0.8
73,577 - HP15_68 0.12 -0.0
73,579 + HP15_68 0.12 +0.5
73,579 - HP15_68 0.12 +0.3
73,623 + HP15_68 0.14 +0.4
73,648 + HP15_68 0.14 -0.4
73,726 - HP15_68 0.17 -0.7
73,761 - HP15_68 0.18 +0.7
73,802 + HP15_68 0.19 +0.5
73,832 + HP15_68 0.20 -1.3
73,841 - HP15_68 0.20 +0.1
73,874 + HP15_68 0.21 +2.3
73,887 - HP15_68 0.21 -0.7
73,906 - HP15_68 0.22 +1.0
73,912 - HP15_68 0.22 -0.8
73,924 - HP15_68 0.22 +0.9
74,032 + HP15_68 0.25 +1.0
74,040 - HP15_68 0.26 +1.0
74,051 + HP15_68 0.26 +0.3
74,056 + HP15_68 0.26 -0.1
74,058 + HP15_68 0.26 -0.3
74,063 + HP15_68 0.26 +0.0
74,063 + HP15_68 0.26 +1.9
74,068 + HP15_68 0.26 +0.3
74,083 - HP15_68 0.27 -0.9
74,119 + HP15_68 0.28 +1.5
74,129 + HP15_68 0.28 -0.3
74,132 - HP15_68 0.28 -0.5
74,137 - HP15_68 0.28 -1.2
74,260 - HP15_68 0.32 +0.0
74,315 - HP15_68 0.33 +0.7
74,320 - HP15_68 0.34 -0.6
74,328 - HP15_68 0.34 -0.4
74,378 - HP15_68 0.35 -0.1
74,389 + HP15_68 0.36 +0.3
74,392 - HP15_68 0.36 -1.3
74,455 + HP15_68 0.37 +0.7
74,485 + HP15_68 0.38 -1.2
74,490 + HP15_68 0.38 +1.4
74,513 - HP15_68 0.39 -0.7
74,547 + HP15_68 0.40 +0.5
74,550 - HP15_68 0.40 +0.2
74,555 - HP15_68 0.40 +0.4
74,559 + HP15_68 0.40 -0.7
74,576 + HP15_68 0.41 +0.0
74,584 - HP15_68 0.41 -0.3
74,601 + HP15_68 0.42 -1.1
74,669 + HP15_68 0.44 -0.2
74,669 + HP15_68 0.44 -0.6
74,766 + HP15_68 0.46 +0.5
74,780 - HP15_68 0.47 +0.3
74,807 + HP15_68 0.47 -1.0
74,830 + HP15_68 0.48 +2.6
74,831 + HP15_68 0.48 +1.0
74,933 + HP15_68 0.51 +0.8
74,936 - HP15_68 0.51 -0.9
74,941 - HP15_68 0.51 -0.1
74,956 + HP15_68 0.52 -1.5
74,959 - HP15_68 0.52 -0.6
74,966 + HP15_68 0.52 -0.7
74,966 + HP15_68 0.52 -1.2
75,099 - HP15_68 0.56 +0.9
75,113 - HP15_68 0.56 -0.2
75,146 + HP15_68 0.57 -0.9
75,219 - HP15_68 0.59 -0.3
75,233 - HP15_68 0.60 -0.4
75,337 + HP15_68 0.63 -0.6
75,406 - HP15_68 0.65 -0.3
75,459 + HP15_68 0.66 -0.4
75,487 - HP15_68 0.67 -0.2
75,489 - HP15_68 0.67 -1.2
75,489 - HP15_68 0.67 +0.0
75,489 - HP15_68 0.67 -0.0
75,534 - HP15_68 0.68 +0.8
75,545 + HP15_68 0.69 +1.3
75,564 - HP15_68 0.69 +2.0
75,611 + HP15_68 0.71 -0.0
75,611 + HP15_68 0.71 -1.8
75,616 + HP15_68 0.71 -0.5
75,654 - HP15_68 0.72 +0.3
75,739 - HP15_68 0.74 -0.6
75,739 - HP15_68 0.74 -0.7
75,777 + HP15_68 0.75 -1.0
75,777 + HP15_68 0.75 -0.6
75,798 - HP15_68 0.76 -0.2
75,829 - HP15_68 0.77 +0.4
75,890 - HP15_68 0.79 +0.6
75,890 - HP15_68 0.79 +0.0
75,940 + HP15_68 0.80 +0.3
75,940 + HP15_68 0.80 -0.7
75,955 - HP15_68 0.80 -0.6
75,989 + HP15_68 0.81 -0.3
76,061 + HP15_68 0.83 -0.1
76,081 + HP15_68 0.84 +0.7
76,090 - HP15_68 0.84 +1.3
76,115 - HP15_68 0.85 -0.7
76,123 + HP15_68 0.85 -0.6
76,123 + HP15_68 0.85 +0.2
76,131 - HP15_68 0.85 -0.4
76,131 - HP15_68 0.85 -0.8
76,154 - HP15_68 0.86 +0.1
76,272 - HP15_68 0.89 -0.1
76,284 + HP15_68 0.90 -0.5
76,298 - -1.1
76,298 - -0.1
76,432 + -0.3
76,434 + +0.2
76,442 - +1.1
76,442 - +0.9
76,450 + -0.2
76,486 - +0.6
76,511 + -0.1
76,551 + -2.0
76,559 + -1.1
76,566 + -1.4
76,566 + +0.2
76,688 + +0.3
76,696 - +0.6
76,728 + +1.6
76,752 + +0.0
76,762 + -1.2
76,861 - -0.6
76,861 - +0.0
76,888 - -1.4
76,905 + -0.5
76,907 + -1.9
76,913 - -1.1
76,923 - +1.0
76,955 + -0.4
77,001 + +0.6
77,009 - +1.3
77,015 + -0.7
77,054 - +0.3
77,089 + +0.2
77,089 + +0.6
77,089 + +1.0
77,089 + -0.1
77,092 - +0.4
77,097 - -1.0
77,183 + -0.2
77,331 - +0.3
77,353 + +2.0
77,378 - -0.1
77,379 + -0.2
77,478 - +0.4
77,565 + +0.1
77,594 + -0.2
77,607 - -0.3

Or see this region's nucleotide sequence