Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_516 and HP15_517 are separated by 68 nucleotides HP15_517 and HP15_518 overlap by 4 nucleotides HP15_518 and HP15_519 are separated by 4 nucleotides HP15_519 and HP15_520 are separated by 5 nucleotides
HP15_516: HP15_516 - hypothetical protein, at 529,732 to 529,857
_516
HP15_517: HP15_517 - membrane or secreted protein, at 529,926 to 530,321
_517
HP15_518: HP15_518 - type IV pilus assembly protein PilW, at 530,318 to 531,349
_518
HP15_519: HP15_519 - membrane or secreted protein, at 531,354 to 531,962
_519
HP15_520: HP15_520 - type IV pilus biogenesis protein, at 531,968 to 535,465
_520
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 529.421 kb on - strand at 529.430 kb on - strand at 529.467 kb on - strand at 529.479 kb on - strand at 529.556 kb on - strand at 529.556 kb on - strand at 529.568 kb on - strand at 529.860 kb on - strand at 529.898 kb on + strand at 529.906 kb on - strand at 530.152 kb on + strand, within HP15_517 at 530.160 kb on - strand, within HP15_517 at 530.215 kb on - strand, within HP15_517 at 530.254 kb on + strand, within HP15_517 at 530.627 kb on - strand, within HP15_518 at 530.727 kb on + strand, within HP15_518 at 530.867 kb on + strand, within HP15_518 at 531.033 kb on - strand, within HP15_518 at 531.033 kb on - strand, within HP15_518 at 531.099 kb on + strand, within HP15_518 at 531.099 kb on + strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.108 kb on - strand, within HP15_518 at 531.207 kb on + strand, within HP15_518 at 531.207 kb on + strand, within HP15_518 at 531.252 kb on + strand at 531.252 kb on + strand at 531.260 kb on - strand at 531.751 kb on - strand, within HP15_519 at 532.004 kb on + strand at 532.082 kb on - strand at 532.119 kb on + strand at 532.216 kb on - strand at 532.216 kb on - strand at 532.233 kb on + strand at 532.233 kb on + strand at 532.264 kb on - strand at 532.291 kb on - strand at 532.328 kb on + strand, within HP15_520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 529,421 - +0.3 529,430 - -0.3 529,467 - -0.3 529,479 - -0.4 529,556 - +0.4 529,556 - -0.4 529,568 - -0.3 529,860 - +0.8 529,898 + +0.1 529,906 - +1.5 530,152 + HP15_517 0.57 +0.1 530,160 - HP15_517 0.59 +0.0 530,215 - HP15_517 0.73 -0.3 530,254 + HP15_517 0.83 +0.4 530,627 - HP15_518 0.30 -2.5 530,727 + HP15_518 0.40 -0.1 530,867 + HP15_518 0.53 +0.5 531,033 - HP15_518 0.69 -0.9 531,033 - HP15_518 0.69 +0.3 531,099 + HP15_518 0.76 -0.5 531,099 + HP15_518 0.76 -1.6 531,108 - HP15_518 0.77 -1.6 531,108 - HP15_518 0.77 +0.2 531,108 - HP15_518 0.77 -0.9 531,207 + HP15_518 0.86 -0.8 531,207 + HP15_518 0.86 -3.1 531,252 + -1.2 531,252 + -0.2 531,260 - -0.7 531,751 - HP15_519 0.65 -2.1 532,004 + -0.8 532,082 - +1.2 532,119 + -0.6 532,216 - +0.7 532,216 - -1.5 532,233 + -0.5 532,233 + -0.9 532,264 - -0.1 532,291 - -0.2 532,328 + HP15_520 0.10 +1.0
Or see this region's nucleotide sequence