Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00140

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00130 and PGA1_78p00140 overlap by 4 nucleotidesPGA1_78p00140 and PGA1_78p00150 are separated by 23 nucleotides PGA1_78p00130: PGA1_78p00130 - putative oxidoreductase, GFO/IDH/MOCA family, at 15,634 to 16,758 _78p00130 PGA1_78p00140: PGA1_78p00140 - Sugar phosphate isomerases/epimerases, at 16,755 to 17,810 _78p00140 PGA1_78p00150: PGA1_78p00150 - putative HTH-type transcriptional regulator, at 17,834 to 18,874 _78p00150 Position (kb) 16 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1at 15.965 kb on - strand, within PGA1_78p00130at 16.567 kb on + strand, within PGA1_78p00130at 16.720 kb on - strandat 16.720 kb on - strandat 17.056 kb on + strand, within PGA1_78p00140at 17.188 kb on + strand, within PGA1_78p00140at 17.312 kb on - strand, within PGA1_78p00140at 17.370 kb on - strand, within PGA1_78p00140at 17.821 kb on + strandat 18.010 kb on - strand, within PGA1_78p00150at 18.452 kb on - strand, within PGA1_78p00150at 18.683 kb on + strand, within PGA1_78p00150

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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15,965 - PGA1_78p00130 0.29 +1.5
16,567 + PGA1_78p00130 0.83 +0.2
16,720 - +1.2
16,720 - +0.2
17,056 + PGA1_78p00140 0.29 -0.8
17,188 + PGA1_78p00140 0.41 -2.8
17,312 - PGA1_78p00140 0.53 -0.7
17,370 - PGA1_78p00140 0.58 -0.4
17,821 + +0.2
18,010 - PGA1_78p00150 0.17 -0.4
18,452 - PGA1_78p00150 0.59 -1.6
18,683 + PGA1_78p00150 0.82 -0.2

Or see this region's nucleotide sequence