Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02320

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02300 and PGA1_262p02310 are separated by 122 nucleotidesPGA1_262p02310 and PGA1_262p02320 are separated by 3 nucleotidesPGA1_262p02320 and PGA1_262p02330 are separated by 2 nucleotides PGA1_262p02300: PGA1_262p02300 - UDP-glucose/GDP-mannose dehydrogenase, at 251,609 to 252,880 _262p02300 PGA1_262p02310: PGA1_262p02310 - amidinotransferase, at 253,003 to 253,785 _262p02310 PGA1_262p02320: PGA1_262p02320 - putative acetolactate synthase isozyme 1 large subunit, at 253,789 to 255,444 _262p02320 PGA1_262p02330: PGA1_262p02330 - putative aspartate aminotransferase, at 255,447 to 256,634 _262p02330 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 252.836 kb on + strandat 252.949 kb on - strandat 253.203 kb on + strand, within PGA1_262p02310at 253.290 kb on - strand, within PGA1_262p02310at 253.290 kb on - strand, within PGA1_262p02310at 253.372 kb on + strand, within PGA1_262p02310at 253.445 kb on + strand, within PGA1_262p02310at 253.469 kb on - strand, within PGA1_262p02310at 253.623 kb on + strand, within PGA1_262p02310at 253.623 kb on + strand, within PGA1_262p02310at 253.631 kb on - strand, within PGA1_262p02310at 253.694 kb on - strand, within PGA1_262p02310at 253.694 kb on - strand, within PGA1_262p02310at 253.765 kb on + strandat 253.878 kb on - strandat 253.887 kb on + strandat 253.904 kb on - strandat 253.988 kb on + strand, within PGA1_262p02320at 254.372 kb on + strand, within PGA1_262p02320at 254.377 kb on + strand, within PGA1_262p02320at 254.380 kb on - strand, within PGA1_262p02320at 254.590 kb on - strand, within PGA1_262p02320at 254.592 kb on + strand, within PGA1_262p02320at 254.655 kb on - strand, within PGA1_262p02320at 254.765 kb on - strand, within PGA1_262p02320at 254.770 kb on - strand, within PGA1_262p02320at 254.847 kb on + strand, within PGA1_262p02320at 254.855 kb on + strand, within PGA1_262p02320at 254.863 kb on - strand, within PGA1_262p02320at 254.863 kb on - strand, within PGA1_262p02320at 254.863 kb on - strand, within PGA1_262p02320at 254.863 kb on - strand, within PGA1_262p02320at 254.863 kb on - strand, within PGA1_262p02320at 254.948 kb on + strand, within PGA1_262p02320at 254.956 kb on - strand, within PGA1_262p02320at 254.994 kb on + strand, within PGA1_262p02320at 255.013 kb on - strand, within PGA1_262p02320at 255.142 kb on - strand, within PGA1_262p02320at 255.198 kb on + strand, within PGA1_262p02320at 255.201 kb on - strand, within PGA1_262p02320at 255.228 kb on - strand, within PGA1_262p02320at 255.246 kb on + strand, within PGA1_262p02320at 255.254 kb on - strand, within PGA1_262p02320at 255.463 kb on + strandat 255.598 kb on - strand, within PGA1_262p02330at 255.674 kb on + strand, within PGA1_262p02330at 255.674 kb on + strand, within PGA1_262p02330at 255.705 kb on - strand, within PGA1_262p02330at 255.794 kb on + strand, within PGA1_262p02330at 255.873 kb on - strand, within PGA1_262p02330at 255.895 kb on + strand, within PGA1_262p02330at 255.962 kb on - strand, within PGA1_262p02330at 256.032 kb on + strand, within PGA1_262p02330at 256.094 kb on - strand, within PGA1_262p02330at 256.100 kb on + strand, within PGA1_262p02330at 256.225 kb on + strand, within PGA1_262p02330at 256.432 kb on - strand, within PGA1_262p02330

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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252,836 + +0.5
252,949 - +0.4
253,203 + PGA1_262p02310 0.26 +0.7
253,290 - PGA1_262p02310 0.37 +1.5
253,290 - PGA1_262p02310 0.37 -1.6
253,372 + PGA1_262p02310 0.47 +0.2
253,445 + PGA1_262p02310 0.56 +0.6
253,469 - PGA1_262p02310 0.60 +1.1
253,623 + PGA1_262p02310 0.79 +0.3
253,623 + PGA1_262p02310 0.79 +0.4
253,631 - PGA1_262p02310 0.80 +0.3
253,694 - PGA1_262p02310 0.88 -0.4
253,694 - PGA1_262p02310 0.88 -0.3
253,765 + +2.1
253,878 - +0.6
253,887 + -0.3
253,904 - +0.0
253,988 + PGA1_262p02320 0.12 -1.0
254,372 + PGA1_262p02320 0.35 -0.1
254,377 + PGA1_262p02320 0.36 +0.6
254,380 - PGA1_262p02320 0.36 +0.6
254,590 - PGA1_262p02320 0.48 +2.1
254,592 + PGA1_262p02320 0.48 -0.6
254,655 - PGA1_262p02320 0.52 -0.2
254,765 - PGA1_262p02320 0.59 +0.5
254,770 - PGA1_262p02320 0.59 +0.2
254,847 + PGA1_262p02320 0.64 -0.7
254,855 + PGA1_262p02320 0.64 -0.5
254,863 - PGA1_262p02320 0.65 +0.1
254,863 - PGA1_262p02320 0.65 +0.1
254,863 - PGA1_262p02320 0.65 -1.2
254,863 - PGA1_262p02320 0.65 +0.9
254,863 - PGA1_262p02320 0.65 -1.1
254,948 + PGA1_262p02320 0.70 -1.9
254,956 - PGA1_262p02320 0.70 +0.6
254,994 + PGA1_262p02320 0.73 -0.9
255,013 - PGA1_262p02320 0.74 +1.1
255,142 - PGA1_262p02320 0.82 +0.4
255,198 + PGA1_262p02320 0.85 -1.9
255,201 - PGA1_262p02320 0.85 -0.9
255,228 - PGA1_262p02320 0.87 -0.2
255,246 + PGA1_262p02320 0.88 -0.9
255,254 - PGA1_262p02320 0.88 -0.5
255,463 + +0.8
255,598 - PGA1_262p02330 0.13 +1.1
255,674 + PGA1_262p02330 0.19 +0.5
255,674 + PGA1_262p02330 0.19 -0.2
255,705 - PGA1_262p02330 0.22 -0.6
255,794 + PGA1_262p02330 0.29 -1.9
255,873 - PGA1_262p02330 0.36 -2.6
255,895 + PGA1_262p02330 0.38 -0.4
255,962 - PGA1_262p02330 0.43 +1.5
256,032 + PGA1_262p02330 0.49 -2.6
256,094 - PGA1_262p02330 0.54 -0.7
256,100 + PGA1_262p02330 0.55 -2.4
256,225 + PGA1_262p02330 0.65 -1.2
256,432 - PGA1_262p02330 0.83 -1.1

Or see this region's nucleotide sequence