Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3703 and HP15_3704 are separated by 6 nucleotides HP15_3704 and HP15_3705 are separated by 128 nucleotides
HP15_3703: HP15_3703 - DNA polymerase III, beta chain, at 3,907,506 to 3,908,609
_3703
HP15_3704: HP15_3704 - ABC1 family protein kinase-like protein, at 3,908,616 to 3,909,896
_3704
HP15_3705: HP15_3705 - DNA replication and repair protein recF, at 3,910,025 to 3,911,152
_3705
Position (kb)
3908
3909
3910 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3908.629 kb on + strand at 3908.662 kb on + strand at 3908.733 kb on - strand at 3908.760 kb on - strand, within HP15_3704 at 3908.830 kb on + strand, within HP15_3704 at 3908.873 kb on + strand, within HP15_3704 at 3908.907 kb on + strand, within HP15_3704 at 3908.965 kb on - strand, within HP15_3704 at 3908.981 kb on + strand, within HP15_3704 at 3908.989 kb on - strand, within HP15_3704 at 3909.073 kb on + strand, within HP15_3704 at 3909.210 kb on - strand, within HP15_3704 at 3909.210 kb on - strand, within HP15_3704 at 3909.210 kb on - strand, within HP15_3704 at 3909.316 kb on + strand, within HP15_3704 at 3909.320 kb on + strand, within HP15_3704 at 3909.418 kb on - strand, within HP15_3704 at 3909.876 kb on + strand at 3909.878 kb on + strand at 3909.935 kb on - strand at 3910.183 kb on + strand, within HP15_3705 at 3910.191 kb on + strand, within HP15_3705 at 3910.345 kb on + strand, within HP15_3705 at 3910.410 kb on + strand, within HP15_3705 at 3910.574 kb on + strand, within HP15_3705 at 3910.806 kb on + strand, within HP15_3705
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,908,629 + -0.3 3,908,662 + -0.7 3,908,733 - -0.6 3,908,760 - HP15_3704 0.11 +0.9 3,908,830 + HP15_3704 0.17 +0.7 3,908,873 + HP15_3704 0.20 +0.6 3,908,907 + HP15_3704 0.23 -0.8 3,908,965 - HP15_3704 0.27 +0.7 3,908,981 + HP15_3704 0.28 +2.7 3,908,989 - HP15_3704 0.29 +1.6 3,909,073 + HP15_3704 0.36 +0.1 3,909,210 - HP15_3704 0.46 -1.5 3,909,210 - HP15_3704 0.46 +0.1 3,909,210 - HP15_3704 0.46 +0.6 3,909,316 + HP15_3704 0.55 -0.2 3,909,320 + HP15_3704 0.55 +0.1 3,909,418 - HP15_3704 0.63 +0.4 3,909,876 + +0.7 3,909,878 + +1.1 3,909,935 - -1.2 3,910,183 + HP15_3705 0.14 +0.1 3,910,191 + HP15_3705 0.15 -0.8 3,910,345 + HP15_3705 0.28 +0.5 3,910,410 + HP15_3705 0.34 +0.1 3,910,574 + HP15_3705 0.49 +0.5 3,910,806 + HP15_3705 0.69 -2.2
Or see this region's nucleotide sequence