Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3366 and HP15_3367 are separated by 107 nucleotides HP15_3367 and HP15_3368 are separated by 216 nucleotides
HP15_3366: HP15_3366 - cation-transporting ATPase, E1-E2 family protein, at 3,530,692 to 3,533,418
_3366
HP15_3367: HP15_3367 - twin-arginine translocation pathway signal, at 3,533,526 to 3,535,268
_3367
HP15_3368: HP15_3368 - membrane protein containing DUF1282, at 3,535,485 to 3,536,096
_3368
Position (kb)
3533
3534
3535
3536 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3532.567 kb on - strand, within HP15_3366 at 3532.666 kb on - strand, within HP15_3366 at 3532.694 kb on + strand, within HP15_3366 at 3532.726 kb on + strand, within HP15_3366 at 3532.748 kb on + strand, within HP15_3366 at 3532.790 kb on - strand, within HP15_3366 at 3532.795 kb on + strand, within HP15_3366 at 3532.827 kb on + strand, within HP15_3366 at 3532.827 kb on - strand, within HP15_3366 at 3533.075 kb on + strand, within HP15_3366 at 3533.075 kb on + strand, within HP15_3366 at 3533.075 kb on + strand, within HP15_3366 at 3533.115 kb on + strand, within HP15_3366 at 3533.185 kb on - strand at 3533.289 kb on + strand at 3533.302 kb on - strand at 3533.381 kb on - strand at 3533.384 kb on + strand at 3533.449 kb on + strand at 3533.477 kb on + strand at 3533.541 kb on + strand at 3533.541 kb on + strand at 3533.549 kb on - strand at 3533.549 kb on - strand at 3533.569 kb on + strand at 3533.674 kb on - strand at 3533.681 kb on + strand at 3533.709 kb on - strand, within HP15_3367 at 3533.742 kb on - strand, within HP15_3367 at 3533.900 kb on + strand, within HP15_3367 at 3533.992 kb on + strand, within HP15_3367 at 3534.000 kb on - strand, within HP15_3367 at 3534.016 kb on + strand, within HP15_3367 at 3534.049 kb on + strand, within HP15_3367 at 3534.088 kb on + strand, within HP15_3367 at 3534.096 kb on - strand, within HP15_3367 at 3534.393 kb on - strand, within HP15_3367 at 3534.419 kb on - strand, within HP15_3367 at 3534.509 kb on - strand, within HP15_3367 at 3534.655 kb on - strand, within HP15_3367 at 3534.662 kb on + strand, within HP15_3367 at 3534.760 kb on + strand, within HP15_3367 at 3534.873 kb on + strand, within HP15_3367 at 3534.873 kb on + strand, within HP15_3367 at 3534.881 kb on - strand, within HP15_3367 at 3534.938 kb on - strand, within HP15_3367 at 3534.948 kb on + strand, within HP15_3367 at 3534.968 kb on + strand, within HP15_3367 at 3534.990 kb on + strand, within HP15_3367 at 3535.003 kb on - strand, within HP15_3367 at 3535.027 kb on + strand, within HP15_3367 at 3535.095 kb on - strand at 3535.096 kb on - strand at 3535.134 kb on - strand at 3535.136 kb on + strand at 3535.142 kb on + strand at 3535.142 kb on + strand at 3535.150 kb on - strand at 3535.163 kb on + strand at 3535.173 kb on + strand at 3535.173 kb on + strand at 3535.173 kb on + strand at 3535.173 kb on + strand at 3535.173 kb on + strand at 3535.173 kb on + strand at 3535.181 kb on - strand at 3535.181 kb on - strand at 3535.181 kb on - strand at 3535.186 kb on - strand at 3535.195 kb on - strand at 3535.222 kb on + strand at 3535.309 kb on + strand at 3535.317 kb on - strand at 3535.318 kb on - strand at 3535.502 kb on - strand at 3535.687 kb on + strand, within HP15_3368 at 3535.705 kb on + strand, within HP15_3368 at 3535.705 kb on + strand, within HP15_3368 at 3535.705 kb on + strand, within HP15_3368 at 3535.705 kb on + strand, within HP15_3368 at 3535.713 kb on - strand, within HP15_3368 at 3535.713 kb on - strand, within HP15_3368 at 3535.731 kb on + strand, within HP15_3368 at 3535.731 kb on + strand, within HP15_3368 at 3535.731 kb on + strand, within HP15_3368 at 3535.739 kb on - strand, within HP15_3368 at 3535.749 kb on - strand, within HP15_3368 at 3535.760 kb on + strand, within HP15_3368 at 3535.768 kb on - strand, within HP15_3368 at 3535.770 kb on + strand, within HP15_3368 at 3535.825 kb on + strand, within HP15_3368 at 3535.825 kb on + strand, within HP15_3368 at 3535.825 kb on + strand, within HP15_3368 at 3535.833 kb on - strand, within HP15_3368 at 3535.867 kb on - strand, within HP15_3368 at 3535.893 kb on + strand, within HP15_3368 at 3536.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,532,567 - HP15_3366 0.69 -0.2 3,532,666 - HP15_3366 0.72 +0.5 3,532,694 + HP15_3366 0.73 +1.7 3,532,726 + HP15_3366 0.75 -0.6 3,532,748 + HP15_3366 0.75 +1.4 3,532,790 - HP15_3366 0.77 -0.3 3,532,795 + HP15_3366 0.77 -0.1 3,532,827 + HP15_3366 0.78 -0.3 3,532,827 - HP15_3366 0.78 +0.2 3,533,075 + HP15_3366 0.87 -0.6 3,533,075 + HP15_3366 0.87 +0.7 3,533,075 + HP15_3366 0.87 +0.7 3,533,115 + HP15_3366 0.89 +0.2 3,533,185 - +0.7 3,533,289 + +0.3 3,533,302 - -2.1 3,533,381 - -0.4 3,533,384 + +0.7 3,533,449 + +0.2 3,533,477 + +0.3 3,533,541 + -0.5 3,533,541 + +0.5 3,533,549 - -0.4 3,533,549 - +0.2 3,533,569 + +1.0 3,533,674 - -0.5 3,533,681 + -0.6 3,533,709 - HP15_3367 0.10 -0.3 3,533,742 - HP15_3367 0.12 +0.2 3,533,900 + HP15_3367 0.21 +0.3 3,533,992 + HP15_3367 0.27 +0.5 3,534,000 - HP15_3367 0.27 -0.6 3,534,016 + HP15_3367 0.28 +2.2 3,534,049 + HP15_3367 0.30 +0.2 3,534,088 + HP15_3367 0.32 +0.2 3,534,096 - HP15_3367 0.33 +0.7 3,534,393 - HP15_3367 0.50 -0.0 3,534,419 - HP15_3367 0.51 -0.5 3,534,509 - HP15_3367 0.56 -0.4 3,534,655 - HP15_3367 0.65 +2.1 3,534,662 + HP15_3367 0.65 +0.5 3,534,760 + HP15_3367 0.71 +0.2 3,534,873 + HP15_3367 0.77 +1.3 3,534,873 + HP15_3367 0.77 +1.2 3,534,881 - HP15_3367 0.78 -0.1 3,534,938 - HP15_3367 0.81 +0.3 3,534,948 + HP15_3367 0.82 +0.6 3,534,968 + HP15_3367 0.83 -0.1 3,534,990 + HP15_3367 0.84 +2.7 3,535,003 - HP15_3367 0.85 +0.1 3,535,027 + HP15_3367 0.86 +0.1 3,535,095 - +2.0 3,535,096 - -0.9 3,535,134 - +0.3 3,535,136 + +1.7 3,535,142 + -0.3 3,535,142 + +2.0 3,535,150 - -0.6 3,535,163 + -0.9 3,535,173 + +1.0 3,535,173 + -0.9 3,535,173 + +2.9 3,535,173 + -0.6 3,535,173 + +1.1 3,535,173 + +0.2 3,535,181 - +3.4 3,535,181 - +1.7 3,535,181 - +0.6 3,535,186 - +0.5 3,535,195 - -0.4 3,535,222 + +0.1 3,535,309 + -1.0 3,535,317 - -0.3 3,535,318 - -0.5 3,535,502 - -0.9 3,535,687 + HP15_3368 0.33 -0.3 3,535,705 + HP15_3368 0.36 -0.1 3,535,705 + HP15_3368 0.36 -0.9 3,535,705 + HP15_3368 0.36 -0.5 3,535,705 + HP15_3368 0.36 -1.0 3,535,713 - HP15_3368 0.37 +1.8 3,535,713 - HP15_3368 0.37 -0.7 3,535,731 + HP15_3368 0.40 +0.7 3,535,731 + HP15_3368 0.40 +0.7 3,535,731 + HP15_3368 0.40 -0.4 3,535,739 - HP15_3368 0.42 +0.2 3,535,749 - HP15_3368 0.43 -0.5 3,535,760 + HP15_3368 0.45 -1.3 3,535,768 - HP15_3368 0.46 -0.7 3,535,770 + HP15_3368 0.47 +0.3 3,535,825 + HP15_3368 0.56 -1.3 3,535,825 + HP15_3368 0.56 -0.1 3,535,825 + HP15_3368 0.56 -1.0 3,535,833 - HP15_3368 0.57 +0.8 3,535,867 - HP15_3368 0.62 +0.9 3,535,893 + HP15_3368 0.67 -0.3 3,536,083 + +0.5
Or see this region's nucleotide sequence