Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2953 and HP15_2954 are separated by 177 nucleotides HP15_2954 and HP15_2955 are separated by 15 nucleotides
HP15_2953: HP15_2953 - oxygen-independent coproporphyrinogen III oxidase, at 3,095,446 to 3,096,864
_2953
HP15_2954: HP15_2954 - deoxyribodipyrimidine photolyase-related protein, at 3,097,042 to 3,098,631
_2954
HP15_2955: HP15_2955 - ATP-binding component of ABC transporter, at 3,098,647 to 3,099,765
_2955
Position (kb)
3097
3098
3099 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3096.047 kb on + strand, within HP15_2953 at 3096.094 kb on + strand, within HP15_2953 at 3096.147 kb on + strand, within HP15_2953 at 3096.251 kb on + strand, within HP15_2953 at 3096.314 kb on - strand, within HP15_2953 at 3096.314 kb on - strand, within HP15_2953 at 3096.345 kb on - strand, within HP15_2953 at 3096.359 kb on - strand, within HP15_2953 at 3096.383 kb on - strand, within HP15_2953 at 3096.389 kb on + strand, within HP15_2953 at 3096.395 kb on - strand, within HP15_2953 at 3096.397 kb on - strand, within HP15_2953 at 3096.397 kb on - strand, within HP15_2953 at 3096.429 kb on - strand, within HP15_2953 at 3096.491 kb on + strand, within HP15_2953 at 3096.634 kb on - strand, within HP15_2953 at 3096.634 kb on - strand, within HP15_2953 at 3096.636 kb on - strand, within HP15_2953 at 3096.651 kb on + strand, within HP15_2953 at 3096.712 kb on + strand, within HP15_2953 at 3096.758 kb on + strand at 3096.793 kb on + strand at 3096.796 kb on - strand at 3096.840 kb on - strand at 3096.840 kb on - strand at 3096.853 kb on + strand at 3096.911 kb on - strand at 3097.022 kb on + strand at 3097.022 kb on + strand at 3097.022 kb on + strand at 3097.053 kb on - strand at 3097.060 kb on + strand at 3097.171 kb on + strand at 3097.171 kb on + strand at 3097.259 kb on - strand, within HP15_2954 at 3097.259 kb on - strand, within HP15_2954 at 3097.316 kb on - strand, within HP15_2954 at 3097.344 kb on - strand, within HP15_2954 at 3097.344 kb on - strand, within HP15_2954 at 3097.367 kb on + strand, within HP15_2954 at 3097.415 kb on - strand, within HP15_2954 at 3097.434 kb on + strand, within HP15_2954 at 3097.442 kb on - strand, within HP15_2954 at 3097.532 kb on + strand, within HP15_2954 at 3097.611 kb on + strand, within HP15_2954 at 3097.619 kb on - strand, within HP15_2954 at 3097.621 kb on + strand, within HP15_2954 at 3097.685 kb on - strand, within HP15_2954 at 3097.686 kb on + strand, within HP15_2954 at 3097.720 kb on - strand, within HP15_2954 at 3097.728 kb on - strand, within HP15_2954 at 3097.738 kb on - strand, within HP15_2954 at 3097.829 kb on + strand, within HP15_2954 at 3097.842 kb on - strand, within HP15_2954 at 3097.842 kb on - strand, within HP15_2954 at 3097.842 kb on - strand, within HP15_2954 at 3097.847 kb on - strand, within HP15_2954 at 3097.997 kb on - strand, within HP15_2954 at 3098.028 kb on - strand, within HP15_2954 at 3098.029 kb on - strand, within HP15_2954 at 3098.120 kb on - strand, within HP15_2954 at 3098.184 kb on + strand, within HP15_2954 at 3098.192 kb on - strand, within HP15_2954 at 3098.205 kb on - strand, within HP15_2954 at 3098.293 kb on + strand, within HP15_2954 at 3098.293 kb on + strand, within HP15_2954 at 3098.305 kb on - strand, within HP15_2954 at 3098.360 kb on + strand, within HP15_2954 at 3098.387 kb on + strand, within HP15_2954 at 3098.395 kb on - strand, within HP15_2954 at 3098.478 kb on + strand at 3098.586 kb on + strand at 3098.810 kb on - strand, within HP15_2955 at 3098.856 kb on + strand, within HP15_2955 at 3099.016 kb on - strand, within HP15_2955 at 3099.041 kb on - strand, within HP15_2955 at 3099.053 kb on - strand, within HP15_2955 at 3099.110 kb on - strand, within HP15_2955 at 3099.118 kb on - strand, within HP15_2955 at 3099.188 kb on - strand, within HP15_2955 at 3099.327 kb on - strand, within HP15_2955 at 3099.333 kb on - strand, within HP15_2955 at 3099.358 kb on - strand, within HP15_2955 at 3099.471 kb on - strand, within HP15_2955 at 3099.540 kb on - strand, within HP15_2955 at 3099.565 kb on - strand, within HP15_2955 at 3099.571 kb on + strand, within HP15_2955 at 3099.617 kb on + strand, within HP15_2955 at 3099.619 kb on + strand, within HP15_2955
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 3,096,047 + HP15_2953 0.42 -0.0 3,096,094 + HP15_2953 0.46 -0.2 3,096,147 + HP15_2953 0.49 +0.9 3,096,251 + HP15_2953 0.57 +2.3 3,096,314 - HP15_2953 0.61 -0.4 3,096,314 - HP15_2953 0.61 +0.3 3,096,345 - HP15_2953 0.63 -0.0 3,096,359 - HP15_2953 0.64 +0.2 3,096,383 - HP15_2953 0.66 -0.4 3,096,389 + HP15_2953 0.66 -0.9 3,096,395 - HP15_2953 0.67 +0.3 3,096,397 - HP15_2953 0.67 -0.3 3,096,397 - HP15_2953 0.67 +0.2 3,096,429 - HP15_2953 0.69 -0.9 3,096,491 + HP15_2953 0.74 -0.2 3,096,634 - HP15_2953 0.84 -0.6 3,096,634 - HP15_2953 0.84 +0.8 3,096,636 - HP15_2953 0.84 -0.2 3,096,651 + HP15_2953 0.85 +0.2 3,096,712 + HP15_2953 0.89 +1.0 3,096,758 + +0.7 3,096,793 + -0.0 3,096,796 - +1.0 3,096,840 - -2.0 3,096,840 - -0.0 3,096,853 + +1.6 3,096,911 - +0.3 3,097,022 + -1.0 3,097,022 + +1.3 3,097,022 + +0.7 3,097,053 - +0.2 3,097,060 + -0.5 3,097,171 + -0.1 3,097,171 + +0.5 3,097,259 - HP15_2954 0.14 +0.4 3,097,259 - HP15_2954 0.14 -1.2 3,097,316 - HP15_2954 0.17 +2.0 3,097,344 - HP15_2954 0.19 -1.8 3,097,344 - HP15_2954 0.19 +0.6 3,097,367 + HP15_2954 0.20 -0.7 3,097,415 - HP15_2954 0.23 +1.6 3,097,434 + HP15_2954 0.25 +0.6 3,097,442 - HP15_2954 0.25 -0.5 3,097,532 + HP15_2954 0.31 -0.6 3,097,611 + HP15_2954 0.36 +0.6 3,097,619 - HP15_2954 0.36 -0.3 3,097,621 + HP15_2954 0.36 +0.2 3,097,685 - HP15_2954 0.40 -0.9 3,097,686 + HP15_2954 0.41 +0.2 3,097,720 - HP15_2954 0.43 +0.1 3,097,728 - HP15_2954 0.43 -0.6 3,097,738 - HP15_2954 0.44 +0.5 3,097,829 + HP15_2954 0.49 -0.5 3,097,842 - HP15_2954 0.50 -0.0 3,097,842 - HP15_2954 0.50 -1.5 3,097,842 - HP15_2954 0.50 +0.3 3,097,847 - HP15_2954 0.51 +0.2 3,097,997 - HP15_2954 0.60 -0.1 3,098,028 - HP15_2954 0.62 +0.2 3,098,029 - HP15_2954 0.62 -3.6 3,098,120 - HP15_2954 0.68 -1.9 3,098,184 + HP15_2954 0.72 +0.3 3,098,192 - HP15_2954 0.72 -0.2 3,098,205 - HP15_2954 0.73 -0.8 3,098,293 + HP15_2954 0.79 +1.2 3,098,293 + HP15_2954 0.79 -0.2 3,098,305 - HP15_2954 0.79 +0.2 3,098,360 + HP15_2954 0.83 -0.4 3,098,387 + HP15_2954 0.85 -0.0 3,098,395 - HP15_2954 0.85 +0.1 3,098,478 + -0.4 3,098,586 + -0.4 3,098,810 - HP15_2955 0.15 -0.3 3,098,856 + HP15_2955 0.19 +0.4 3,099,016 - HP15_2955 0.33 +0.2 3,099,041 - HP15_2955 0.35 +0.2 3,099,053 - HP15_2955 0.36 -0.4 3,099,110 - HP15_2955 0.41 -0.5 3,099,118 - HP15_2955 0.42 +0.7 3,099,188 - HP15_2955 0.48 +0.5 3,099,327 - HP15_2955 0.61 +0.8 3,099,333 - HP15_2955 0.61 +0.2 3,099,358 - HP15_2955 0.64 -0.3 3,099,471 - HP15_2955 0.74 -0.5 3,099,540 - HP15_2955 0.80 -0.7 3,099,565 - HP15_2955 0.82 -0.8 3,099,571 + HP15_2955 0.83 -0.1 3,099,617 + HP15_2955 0.87 +0.4 3,099,619 + HP15_2955 0.87 -0.0
Or see this region's nucleotide sequence