Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2789 and HP15_2790 are separated by 103 nucleotides HP15_2790 and HP15_2791 are separated by 33 nucleotides HP15_2791 and HP15_2792 are separated by 42 nucleotides HP15_2792 and HP15_2793 are separated by 100 nucleotides HP15_2793 and HP15_2794 are separated by 135 nucleotides
HP15_2789: HP15_2789 - conserved hypothetical protein, at 2,938,635 to 2,939,384
_2789
HP15_2790: HP15_2790 - hypothetical protein, at 2,939,488 to 2,939,775
_2790
HP15_2791: HP15_2791 - peroxiredoxin, organic hydroperoxide resistance-related protein, at 2,939,809 to 2,940,237
_2791
HP15_2792: HP15_2792 - transcriptional regulator MarR family protein, at 2,940,280 to 2,940,774
_2792
HP15_2793: HP15_2793 - GatB/Yqey domain protein, at 2,940,875 to 2,941,330
_2793
HP15_2794: HP15_2794 - L-allo-threonine aldolase, at 2,941,466 to 2,942,476
_2794
Position (kb)
2940
2941 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2939.380 kb on + strand at 2939.395 kb on + strand at 2939.402 kb on + strand at 2939.448 kb on - strand at 2939.459 kb on + strand at 2939.467 kb on - strand at 2939.501 kb on + strand at 2939.506 kb on + strand at 2939.509 kb on - strand at 2939.511 kb on + strand at 2939.519 kb on - strand, within HP15_2790 at 2939.544 kb on + strand, within HP15_2790 at 2939.552 kb on - strand, within HP15_2790 at 2939.552 kb on - strand, within HP15_2790 at 2939.638 kb on + strand, within HP15_2790 at 2939.651 kb on - strand, within HP15_2790 at 2939.738 kb on + strand, within HP15_2790 at 2939.814 kb on - strand at 2939.834 kb on - strand at 2940.064 kb on + strand, within HP15_2791 at 2940.090 kb on - strand, within HP15_2791 at 2940.193 kb on - strand, within HP15_2791 at 2940.234 kb on + strand at 2940.234 kb on + strand at 2940.242 kb on - strand at 2940.312 kb on - strand at 2940.387 kb on - strand, within HP15_2792 at 2940.423 kb on + strand, within HP15_2792 at 2940.526 kb on - strand, within HP15_2792 at 2940.579 kb on + strand, within HP15_2792 at 2940.593 kb on + strand, within HP15_2792 at 2940.664 kb on - strand, within HP15_2792 at 2940.674 kb on - strand, within HP15_2792 at 2940.758 kb on - strand at 2940.821 kb on + strand at 2940.829 kb on - strand at 2940.881 kb on + strand at 2940.937 kb on - strand, within HP15_2793 at 2940.974 kb on - strand, within HP15_2793 at 2941.050 kb on + strand, within HP15_2793 at 2941.058 kb on - strand, within HP15_2793 at 2941.060 kb on - strand, within HP15_2793 at 2941.306 kb on - strand at 2941.309 kb on + strand at 2941.418 kb on + strand at 2941.418 kb on + strand at 2941.421 kb on + strand at 2941.423 kb on + strand at 2941.482 kb on + strand at 2941.482 kb on + strand at 2941.520 kb on + strand at 2941.520 kb on + strand at 2941.520 kb on + strand at 2941.520 kb on + strand at 2941.528 kb on - strand at 2941.528 kb on - strand at 2941.538 kb on - strand at 2941.571 kb on - strand, within HP15_2794 at 2941.619 kb on + strand, within HP15_2794 at 2941.745 kb on + strand, within HP15_2794 at 2941.753 kb on - strand, within HP15_2794 at 2941.755 kb on - strand, within HP15_2794 at 2941.757 kb on + strand, within HP15_2794 at 2941.763 kb on - strand, within HP15_2794
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,939,380 + -0.2 2,939,395 + -0.1 2,939,402 + -0.7 2,939,448 - -0.3 2,939,459 + -0.4 2,939,467 - +0.2 2,939,501 + +0.2 2,939,506 + +1.4 2,939,509 - +0.1 2,939,511 + +0.7 2,939,519 - HP15_2790 0.11 -0.0 2,939,544 + HP15_2790 0.19 -0.6 2,939,552 - HP15_2790 0.22 -1.0 2,939,552 - HP15_2790 0.22 +0.0 2,939,638 + HP15_2790 0.52 +0.2 2,939,651 - HP15_2790 0.57 +0.1 2,939,738 + HP15_2790 0.87 -1.4 2,939,814 - +1.4 2,939,834 - +0.6 2,940,064 + HP15_2791 0.59 +0.8 2,940,090 - HP15_2791 0.66 +0.6 2,940,193 - HP15_2791 0.90 -0.1 2,940,234 + +3.1 2,940,234 + +0.0 2,940,242 - -0.6 2,940,312 - -0.8 2,940,387 - HP15_2792 0.22 +0.7 2,940,423 + HP15_2792 0.29 +0.2 2,940,526 - HP15_2792 0.50 +1.5 2,940,579 + HP15_2792 0.60 +1.5 2,940,593 + HP15_2792 0.63 +0.6 2,940,664 - HP15_2792 0.78 +1.4 2,940,674 - HP15_2792 0.80 +0.7 2,940,758 - -0.5 2,940,821 + -0.1 2,940,829 - +0.9 2,940,881 + +1.1 2,940,937 - HP15_2793 0.14 +2.6 2,940,974 - HP15_2793 0.22 +0.1 2,941,050 + HP15_2793 0.38 -0.8 2,941,058 - HP15_2793 0.40 -0.5 2,941,060 - HP15_2793 0.41 -0.1 2,941,306 - +0.0 2,941,309 + +0.2 2,941,418 + +0.0 2,941,418 + +0.0 2,941,421 + +1.9 2,941,423 + -1.1 2,941,482 + -0.5 2,941,482 + -0.1 2,941,520 + +0.1 2,941,520 + -0.2 2,941,520 + +0.3 2,941,520 + +1.9 2,941,528 - -1.4 2,941,528 - -0.5 2,941,538 - -0.5 2,941,571 - HP15_2794 0.10 +0.6 2,941,619 + HP15_2794 0.15 +0.6 2,941,745 + HP15_2794 0.28 -0.0 2,941,753 - HP15_2794 0.28 +0.1 2,941,755 - HP15_2794 0.29 -0.6 2,941,757 + HP15_2794 0.29 +0.7 2,941,763 - HP15_2794 0.29 -0.4
Or see this region's nucleotide sequence