Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2625 and HP15_2626 are separated by 15 nucleotides HP15_2626 and HP15_2627 are separated by 4 nucleotides HP15_2627 and HP15_2628 are separated by 192 nucleotides
HP15_2625: HP15_2625 - silent information regulator protein Sir2, at 2,776,695 to 2,777,597
_2625
HP15_2626: HP15_2626 - conserved hypothetical protein, at 2,777,613 to 2,778,344
_2626
HP15_2627: HP15_2627 - protein containing DUF1415, at 2,778,349 to 2,778,909
_2627
HP15_2628: HP15_2628 - ABC transporter ATP-binding protein-like protein, at 2,779,102 to 2,780,688
_2628
Position (kb)
2778
2779 Strain fitness (log2 ratio)
-2
-1
0
1 at 2777.359 kb on + strand, within HP15_2625 at 2777.431 kb on + strand, within HP15_2625 at 2777.438 kb on + strand, within HP15_2625 at 2777.439 kb on - strand, within HP15_2625 at 2777.446 kb on - strand, within HP15_2625 at 2777.703 kb on + strand, within HP15_2626 at 2777.703 kb on + strand, within HP15_2626 at 2777.714 kb on - strand, within HP15_2626 at 2778.106 kb on + strand, within HP15_2626 at 2778.111 kb on + strand, within HP15_2626 at 2778.165 kb on - strand, within HP15_2626 at 2778.345 kb on - strand at 2778.347 kb on + strand at 2778.347 kb on + strand at 2778.347 kb on + strand at 2778.355 kb on - strand at 2778.355 kb on - strand at 2778.392 kb on - strand at 2778.434 kb on - strand, within HP15_2627 at 2778.634 kb on + strand, within HP15_2627 at 2778.756 kb on - strand, within HP15_2627 at 2778.837 kb on + strand, within HP15_2627 at 2778.911 kb on - strand at 2778.957 kb on + strand at 2778.960 kb on + strand at 2778.970 kb on + strand at 2779.010 kb on - strand at 2779.089 kb on - strand at 2779.184 kb on - strand at 2779.355 kb on + strand, within HP15_2628 at 2779.363 kb on - strand, within HP15_2628 at 2779.426 kb on + strand, within HP15_2628 at 2779.441 kb on - strand, within HP15_2628 at 2779.529 kb on + strand, within HP15_2628 at 2779.547 kb on - strand, within HP15_2628 at 2779.666 kb on - strand, within HP15_2628 at 2779.801 kb on - strand, within HP15_2628 at 2779.803 kb on + strand, within HP15_2628
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,777,359 + HP15_2625 0.74 +1.1 2,777,431 + HP15_2625 0.82 +0.5 2,777,438 + HP15_2625 0.82 +0.1 2,777,439 - HP15_2625 0.82 +0.4 2,777,446 - HP15_2625 0.83 +0.1 2,777,703 + HP15_2626 0.12 +0.9 2,777,703 + HP15_2626 0.12 +0.3 2,777,714 - HP15_2626 0.14 +0.2 2,778,106 + HP15_2626 0.67 +0.2 2,778,111 + HP15_2626 0.68 +0.7 2,778,165 - HP15_2626 0.75 +0.5 2,778,345 - +0.7 2,778,347 + -1.0 2,778,347 + +0.9 2,778,347 + +0.5 2,778,355 - -0.3 2,778,355 - +0.2 2,778,392 - +0.1 2,778,434 - HP15_2627 0.15 -1.1 2,778,634 + HP15_2627 0.51 -0.5 2,778,756 - HP15_2627 0.73 -0.1 2,778,837 + HP15_2627 0.87 -2.1 2,778,911 - -0.2 2,778,957 + +1.6 2,778,960 + +0.7 2,778,970 + +0.8 2,779,010 - +0.5 2,779,089 - +0.1 2,779,184 - -0.3 2,779,355 + HP15_2628 0.16 +0.9 2,779,363 - HP15_2628 0.16 -1.0 2,779,426 + HP15_2628 0.20 -0.4 2,779,441 - HP15_2628 0.21 -0.3 2,779,529 + HP15_2628 0.27 -0.3 2,779,547 - HP15_2628 0.28 -0.2 2,779,666 - HP15_2628 0.36 +1.7 2,779,801 - HP15_2628 0.44 +1.5 2,779,803 + HP15_2628 0.44 +1.3
Or see this region's nucleotide sequence