Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20170

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
2,091,001	-		PGA1_c20160	0.58	-2.5
2,091,003	-		PGA1_c20160	0.58	-1.0
2,091,038	-		PGA1_c20160	0.60	-0.8
2,091,038	-		PGA1_c20160	0.60	-2.4
2,091,080	-		PGA1_c20160	0.62	-2.6
2,091,131	-		PGA1_c20160	0.64	+0.4
2,091,138	+		PGA1_c20160	0.64	-1.3
2,091,199	+		PGA1_c20160	0.67	+0.4
2,091,199	+		PGA1_c20160	0.67	-0.4
2,091,207	-		PGA1_c20160	0.67	-3.4
2,091,209	+		PGA1_c20160	0.67	-1.8
2,091,209	+		PGA1_c20160	0.67	-1.3
2,091,209	+		PGA1_c20160	0.67	-1.5
2,091,217	-		PGA1_c20160	0.67	-0.1
2,091,217	-		PGA1_c20160	0.67	-2.5
2,091,217	-		PGA1_c20160	0.67	-3.9
2,091,276	-		PGA1_c20160	0.70	-1.6
2,091,364	+		PGA1_c20160	0.74	-1.8
2,091,449	+		PGA1_c20160	0.77	-3.1
2,091,520	-		PGA1_c20160	0.80	-1.8
2,091,553	+		PGA1_c20160	0.82	-2.6
2,091,574	+		PGA1_c20160	0.83	-2.0
2,091,579	+		PGA1_c20160	0.83	-3.1
2,091,624	-		PGA1_c20160	0.85	-1.9
2,091,656	+		PGA1_c20160	0.86	-1.0
2,091,694	-		PGA1_c20160	0.88	-2.0
2,091,790	-				-2.0
2,091,840	+				-2.0
2,091,872	+				+0.1
2,091,880	-				-0.6
2,091,880	-				-1.9
2,091,978	-				-2.7
2,092,032	+				-1.5
2,092,037	+				+0.4
2,092,037	+				-2.4
2,092,040	-				-0.9
2,092,040	-				-2.2
2,092,040	-				-3.6
2,092,040	-				-2.2
2,092,045	-				-2.4
2,092,045	-				-2.9
2,092,046	-				+0.8
2,092,077	-				-2.5
2,092,077	-				+0.8
2,092,125	+		PGA1_c20170	0.13	+0.4
2,092,175	-		PGA1_c20170	0.19	-3.5
2,092,234	-		PGA1_c20170	0.25	-1.9
2,092,248	+		PGA1_c20170	0.27	-1.2
2,092,266	-		PGA1_c20170	0.29	-1.7
2,092,266	-		PGA1_c20170	0.29	-0.7
2,092,282	+		PGA1_c20170	0.30	-1.4
2,092,322	-		PGA1_c20170	0.35	-2.2
2,092,452	+		PGA1_c20170	0.49	-1.7
2,092,452	+		PGA1_c20170	0.49	-0.4
2,092,488	+		PGA1_c20170	0.53	-2.9
2,092,541	-		PGA1_c20170	0.58	-1.2
2,092,632	-		PGA1_c20170	0.68	-1.1
2,092,650	+		PGA1_c20170	0.70	-1.4
2,092,656	-		PGA1_c20170	0.71	-3.4
2,092,670	+		PGA1_c20170	0.72	-1.8
2,092,693	+		PGA1_c20170	0.75	-1.7
2,092,704	-		PGA1_c20170	0.76	-1.8
2,092,731	+		PGA1_c20170	0.79	-3.5
2,092,739	-		PGA1_c20170	0.80	-2.0
2,092,754	-		PGA1_c20170	0.81	-2.2
2,092,802	+				+0.8
2,092,810	-		PGA1_c20170	0.87	-2.5
2,092,810	-		PGA1_c20170	0.87	-3.1
2,092,810	-		PGA1_c20170	0.87	-1.5
2,092,810	-		PGA1_c20170	0.87	-1.2
2,092,810	-		PGA1_c20170	0.87	-1.4
2,092,858	+				-0.8
2,092,858	+				-1.3
2,092,858	+				-3.3
2,092,858	+				-2.7
2,092,858	+				-2.5
2,092,858	+				-1.2
2,092,858	+				-3.0
2,092,858	+				-0.8
2,092,858	+				-0.8
2,092,858	+				-2.0
2,092,858	+				-1.5
2,092,858	+				-1.8
2,092,858	+				-1.4
2,092,858	+				-1.3
2,092,858	+				-2.6
2,092,858	+				-3.0
2,092,858	+				-2.1
2,092,858	+				-0.5
2,092,866	-				-1.2
2,092,866	-				-1.8
2,092,866	-				-3.0
2,092,866	-				-3.8
2,092,866	-				-3.2
2,092,866	-				-0.8
2,092,866	-				-2.0
2,092,866	-				-1.4
2,092,866	-				-3.7
2,092,866	-				-1.2
2,092,866	-				-1.3
2,092,866	-				-1.2
2,092,866	-				-1.3
2,092,866	-				-3.8
2,092,866	-				-2.5
2,092,866	-				-2.3
2,092,868	+				-2.0
2,092,868	+				-2.7
2,092,868	+				-1.8
2,092,868	+				-1.5
2,092,868	+				-1.0
2,092,868	+				-2.3
2,092,868	+				-2.3
2,092,868	+				-2.4
2,092,868	+				-2.2
2,092,868	+				-1.1
2,092,876	-				-1.8
2,092,876	-				-1.4
2,092,876	-				-2.8
2,092,876	-				-1.7
2,092,876	-				-3.0
2,092,876	-				-1.5
2,092,876	-				-2.1
2,092,881	-				-2.1
2,092,882	+				-2.2
2,092,882	+				-3.4
2,092,885	+				-1.8
2,092,890	-				-2.4
2,092,921	-				-3.3
2,092,951	+				-2.8
2,092,959	-				-0.2
2,092,959	-				-2.1
2,092,959	-				-2.7
2,092,959	-				-0.0
2,092,959	-				-1.3
2,093,007	-				-0.7
2,093,015	+				-0.6
2,093,025	+				-0.9
2,093,025	-				-0.9
2,093,073	+				-0.8
2,093,105	+				-0.1
2,093,105	+				-1.7
2,093,105	+				-2.5
2,093,105	+				-3.1
2,093,106	+				-2.7
2,093,114	-				-0.4
2,093,145	+				+0.8
2,093,176	-				-1.8
2,093,177	-				-1.8
2,093,226	+		PGA1_c20180	0.11	-1.2
2,093,290	+		PGA1_c20180	0.17	+0.8
2,093,324	+		PGA1_c20180	0.20	-2.7
2,093,324	+		PGA1_c20180	0.20	-2.5
2,093,324	+		PGA1_c20180	0.20	-1.8
2,093,337	+		PGA1_c20180	0.21	-1.4
2,093,364	-		PGA1_c20180	0.24	-2.3
2,093,369	+		PGA1_c20180	0.24	-2.7
2,093,410	-		PGA1_c20180	0.28	-1.5
2,093,434	+		PGA1_c20180	0.30	-2.0
2,093,535	-		PGA1_c20180	0.39	-3.8
2,093,568	+		PGA1_c20180	0.42	-1.8
2,093,590	+		PGA1_c20180	0.45	-0.9
2,093,614	-		PGA1_c20180	0.47	-2.7
2,093,630	+		PGA1_c20180	0.48	-1.5
2,093,638	-		PGA1_c20180	0.49	-1.1
2,093,650	+		PGA1_c20180	0.50	-0.8
2,093,650	+		PGA1_c20180	0.50	-1.7
2,093,658	-		PGA1_c20180	0.51	-1.5
2,093,675	+		PGA1_c20180	0.52	-2.1
2,093,786	-		PGA1_c20180	0.63	-3.1
2,093,788	+		PGA1_c20180	0.63	-3.4
2,093,788	+		PGA1_c20180	0.63	-2.9
2,093,788	+		PGA1_c20180	0.63	-1.4
2,093,796	-		PGA1_c20180	0.64	-0.5
2,093,805	+		PGA1_c20180	0.64	-0.7
2,093,824	+		PGA1_c20180	0.66	-2.5
2,093,865	+		PGA1_c20180	0.70	-1.6
2,093,879	-		PGA1_c20180	0.71	-2.0
2,093,884	-		PGA1_c20180	0.72	-2.4
2,093,916	-		PGA1_c20180	0.75	-3.4
2,093,923	+		PGA1_c20180	0.75	-3.1
2,093,923	+		PGA1_c20180	0.75	-3.1
2,093,926	-		PGA1_c20180	0.76	-2.1