Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1910 and HP15_1911 are separated by 39 nucleotides HP15_1911 and HP15_1912 are separated by 423 nucleotides
HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139
_1910
HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203
_1911
HP15_1912: HP15_1912 - polysaccharide biosynthesis protein, at 2,025,627 to 2,026,790
_1912
Position (kb)
2023
2024
2025
2026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2022.273 kb on - strand, within HP15_1910 at 2022.405 kb on - strand, within HP15_1910 at 2022.437 kb on + strand, within HP15_1910 at 2022.440 kb on - strand, within HP15_1910 at 2022.447 kb on + strand, within HP15_1910 at 2022.652 kb on - strand, within HP15_1910 at 2022.764 kb on - strand, within HP15_1910 at 2022.859 kb on + strand at 2022.941 kb on - strand, within HP15_1910 at 2022.979 kb on + strand, within HP15_1910 at 2023.100 kb on - strand at 2023.133 kb on + strand at 2023.188 kb on + strand at 2023.269 kb on + strand at 2023.306 kb on - strand at 2023.408 kb on - strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.556 kb on + strand, within HP15_1911 at 2023.575 kb on - strand, within HP15_1911 at 2023.610 kb on - strand, within HP15_1911 at 2023.642 kb on - strand, within HP15_1911 at 2023.776 kb on - strand, within HP15_1911 at 2023.845 kb on - strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2024.036 kb on - strand, within HP15_1911 at 2024.128 kb on + strand, within HP15_1911 at 2024.219 kb on + strand, within HP15_1911 at 2024.219 kb on + strand, within HP15_1911 at 2024.287 kb on - strand, within HP15_1911 at 2024.382 kb on - strand, within HP15_1911 at 2024.490 kb on + strand, within HP15_1911 at 2024.564 kb on - strand, within HP15_1911 at 2024.608 kb on + strand, within HP15_1911 at 2024.608 kb on + strand, within HP15_1911 at 2024.616 kb on - strand, within HP15_1911 at 2024.663 kb on - strand, within HP15_1911 at 2024.751 kb on + strand, within HP15_1911 at 2024.773 kb on - strand, within HP15_1911 at 2024.813 kb on - strand, within HP15_1911 at 2025.078 kb on - strand at 2025.098 kb on + strand at 2025.177 kb on - strand at 2025.439 kb on - strand at 2025.522 kb on + strand at 2025.522 kb on + strand at 2025.534 kb on + strand at 2025.544 kb on + strand at 2025.643 kb on - strand at 2025.707 kb on - strand at 2025.783 kb on + strand, within HP15_1912 at 2025.791 kb on - strand, within HP15_1912 at 2025.813 kb on + strand, within HP15_1912 at 2025.927 kb on + strand, within HP15_1912 at 2025.946 kb on + strand, within HP15_1912 at 2026.018 kb on + strand, within HP15_1912 at 2026.036 kb on - strand, within HP15_1912 at 2026.052 kb on + strand, within HP15_1912 at 2026.060 kb on - strand, within HP15_1912
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 2,022,273 - HP15_1910 0.38 -0.3 2,022,405 - HP15_1910 0.48 +0.4 2,022,437 + HP15_1910 0.50 +0.5 2,022,440 - HP15_1910 0.50 -0.3 2,022,447 + HP15_1910 0.51 +0.5 2,022,652 - HP15_1910 0.65 -0.0 2,022,764 - HP15_1910 0.73 -2.0 2,022,859 + +0.7 2,022,941 - HP15_1910 0.86 +0.3 2,022,979 + HP15_1910 0.89 +0.0 2,023,100 - -0.6 2,023,133 + -0.6 2,023,188 + -0.3 2,023,269 + -1.1 2,023,306 - +0.4 2,023,408 - HP15_1911 0.11 +0.9 2,023,415 + HP15_1911 0.12 +0.8 2,023,415 + HP15_1911 0.12 +0.8 2,023,556 + HP15_1911 0.19 +0.6 2,023,575 - HP15_1911 0.20 -0.4 2,023,610 - HP15_1911 0.21 +2.0 2,023,642 - HP15_1911 0.23 -1.1 2,023,776 - HP15_1911 0.29 -0.9 2,023,845 - HP15_1911 0.33 -1.3 2,023,872 + HP15_1911 0.34 +0.3 2,023,872 + HP15_1911 0.34 +0.2 2,023,872 + HP15_1911 0.34 -0.0 2,023,872 + HP15_1911 0.34 +0.4 2,023,872 + HP15_1911 0.34 +0.6 2,023,880 - HP15_1911 0.35 -0.1 2,023,880 - HP15_1911 0.35 -1.3 2,023,880 - HP15_1911 0.35 +0.2 2,023,880 - HP15_1911 0.35 +1.2 2,024,036 - HP15_1911 0.42 -0.2 2,024,128 + HP15_1911 0.47 -0.5 2,024,219 + HP15_1911 0.51 +0.5 2,024,219 + HP15_1911 0.51 +0.5 2,024,287 - HP15_1911 0.55 +0.3 2,024,382 - HP15_1911 0.59 +0.1 2,024,490 + HP15_1911 0.65 +0.4 2,024,564 - HP15_1911 0.68 -1.1 2,024,608 + HP15_1911 0.71 -0.2 2,024,608 + HP15_1911 0.71 +0.4 2,024,616 - HP15_1911 0.71 +0.4 2,024,663 - HP15_1911 0.73 +0.5 2,024,751 + HP15_1911 0.78 -0.3 2,024,773 - HP15_1911 0.79 -0.1 2,024,813 - HP15_1911 0.81 +0.7 2,025,078 - +1.3 2,025,098 + -1.3 2,025,177 - -0.8 2,025,439 - +0.5 2,025,522 + -0.6 2,025,522 + -0.6 2,025,534 + +0.8 2,025,544 + -0.3 2,025,643 - -0.4 2,025,707 - +2.9 2,025,783 + HP15_1912 0.13 -2.9 2,025,791 - HP15_1912 0.14 +0.7 2,025,813 + HP15_1912 0.16 -1.1 2,025,927 + HP15_1912 0.26 -0.4 2,025,946 + HP15_1912 0.27 +0.8 2,026,018 + HP15_1912 0.34 +0.1 2,026,036 - HP15_1912 0.35 +0.3 2,026,052 + HP15_1912 0.37 +1.5 2,026,060 - HP15_1912 0.37 -0.3
Or see this region's nucleotide sequence