Experiment: m.b. Tetracycline 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1742 and HP15_1743 are separated by 182 nucleotides HP15_1743 and HP15_1744 are separated by 15 nucleotides
HP15_1742: HP15_1742 - secreted protein, at 1,838,829 to 1,839,464
_1742
HP15_1743: HP15_1743 - conserved hypothetical protein, at 1,839,647 to 1,842,152
_1743
HP15_1744: HP15_1744 - AAA ATPase central domain protein, at 1,842,168 to 1,843,142
_1744
Position (kb)
1839
1840
1841
1842
1843 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1838.658 kb on + strand at 1838.790 kb on + strand at 1838.940 kb on - strand, within HP15_1742 at 1838.940 kb on - strand, within HP15_1742 at 1839.208 kb on - strand, within HP15_1742 at 1839.220 kb on + strand, within HP15_1742 at 1839.340 kb on + strand, within HP15_1742 at 1839.376 kb on + strand, within HP15_1742 at 1839.417 kb on - strand at 1839.425 kb on + strand at 1839.433 kb on - strand at 1839.507 kb on + strand at 1839.525 kb on - strand at 1839.562 kb on + strand at 1839.562 kb on + strand at 1839.570 kb on - strand at 1839.570 kb on - strand at 1839.606 kb on + strand at 1839.606 kb on + strand at 1839.614 kb on - strand at 1839.614 kb on - strand at 1839.618 kb on + strand at 1839.628 kb on - strand at 1839.765 kb on + strand at 1839.784 kb on + strand at 1839.826 kb on + strand at 1839.834 kb on - strand at 1839.866 kb on - strand at 1839.960 kb on - strand, within HP15_1743 at 1839.960 kb on - strand, within HP15_1743 at 1840.113 kb on - strand, within HP15_1743 at 1840.124 kb on - strand, within HP15_1743 at 1840.361 kb on + strand, within HP15_1743 at 1840.514 kb on - strand, within HP15_1743 at 1840.567 kb on - strand, within HP15_1743 at 1840.567 kb on - strand, within HP15_1743 at 1840.627 kb on - strand, within HP15_1743 at 1840.651 kb on + strand, within HP15_1743 at 1840.665 kb on - strand, within HP15_1743 at 1840.855 kb on - strand, within HP15_1743 at 1840.857 kb on + strand, within HP15_1743 at 1840.937 kb on - strand, within HP15_1743 at 1840.942 kb on + strand, within HP15_1743 at 1841.064 kb on - strand, within HP15_1743 at 1841.163 kb on - strand, within HP15_1743 at 1841.371 kb on + strand, within HP15_1743 at 1841.456 kb on - strand, within HP15_1743 at 1841.459 kb on + strand, within HP15_1743 at 1841.591 kb on - strand, within HP15_1743 at 1841.663 kb on - strand, within HP15_1743 at 1841.749 kb on - strand, within HP15_1743 at 1841.758 kb on - strand, within HP15_1743 at 1841.758 kb on - strand, within HP15_1743 at 1841.924 kb on + strand at 1841.932 kb on - strand at 1841.947 kb on + strand at 1841.974 kb on + strand at 1842.013 kb on - strand at 1842.013 kb on - strand at 1842.018 kb on - strand at 1842.411 kb on + strand, within HP15_1744 at 1842.691 kb on + strand, within HP15_1744 at 1843.117 kb on + strand at 1843.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml remove 1,838,658 + -1.6 1,838,790 + -1.2 1,838,940 - HP15_1742 0.17 +0.5 1,838,940 - HP15_1742 0.17 +0.9 1,839,208 - HP15_1742 0.60 -1.1 1,839,220 + HP15_1742 0.61 -0.3 1,839,340 + HP15_1742 0.80 +0.2 1,839,376 + HP15_1742 0.86 +1.5 1,839,417 - -1.1 1,839,425 + +0.8 1,839,433 - +0.0 1,839,507 + -0.1 1,839,525 - -1.3 1,839,562 + -1.9 1,839,562 + +2.0 1,839,570 - -0.4 1,839,570 - +1.1 1,839,606 + +0.4 1,839,606 + +0.2 1,839,614 - -1.1 1,839,614 - +1.3 1,839,618 + +0.5 1,839,628 - +1.0 1,839,765 + -0.7 1,839,784 + -0.6 1,839,826 + -0.3 1,839,834 - +0.3 1,839,866 - +0.8 1,839,960 - HP15_1743 0.12 +0.1 1,839,960 - HP15_1743 0.12 +0.1 1,840,113 - HP15_1743 0.19 -0.7 1,840,124 - HP15_1743 0.19 +0.5 1,840,361 + HP15_1743 0.28 -0.9 1,840,514 - HP15_1743 0.35 -0.9 1,840,567 - HP15_1743 0.37 -0.8 1,840,567 - HP15_1743 0.37 -0.8 1,840,627 - HP15_1743 0.39 -0.6 1,840,651 + HP15_1743 0.40 -0.2 1,840,665 - HP15_1743 0.41 -0.7 1,840,855 - HP15_1743 0.48 +0.2 1,840,857 + HP15_1743 0.48 +0.5 1,840,937 - HP15_1743 0.51 -1.1 1,840,942 + HP15_1743 0.52 +0.0 1,841,064 - HP15_1743 0.57 -0.4 1,841,163 - HP15_1743 0.60 +0.1 1,841,371 + HP15_1743 0.69 -0.8 1,841,456 - HP15_1743 0.72 -0.8 1,841,459 + HP15_1743 0.72 -1.3 1,841,591 - HP15_1743 0.78 +0.2 1,841,663 - HP15_1743 0.80 -0.5 1,841,749 - HP15_1743 0.84 +0.9 1,841,758 - HP15_1743 0.84 +0.7 1,841,758 - HP15_1743 0.84 -1.0 1,841,924 + +0.8 1,841,932 - -0.4 1,841,947 + +0.9 1,841,974 + -0.3 1,842,013 - -0.9 1,842,013 - +0.2 1,842,018 - +1.0 1,842,411 + HP15_1744 0.25 -0.6 1,842,691 + HP15_1744 0.54 -0.9 1,843,117 + -1.3 1,843,152 - -0.4
Or see this region's nucleotide sequence